Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq30067 149 1e-30 seq159469 141 1e-28 >seq30067 Length=5021 Score = 149 bits (164), Expect = 1e-30 Identities = 289/423 (68%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 236266 TAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAGT 236325 ||||| | |||||| | | |||||||||| || ||||||| || | |||||| | Sbjct 3702 TAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAAACTAATAAA 3643 Query 236326 TTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACCA 236385 ||||||||||| || ||||| || || ||| | ||| ||||| ||||| | ||||| Sbjct 3642 TTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCTCTAACACCT 3583 Query 236386 CCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACACCAGTG 236445 ||||||||||| ||||| || || ||||||| ||||| | || || || |||||| Sbjct 3582 CCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATACAACCAGTA 3523 Query 236446 TGACGAAT--CTCACCTGAACGA--ACGACTGCCCCTTCAGCACGAATCGCACCGCCATT 236501 ||| ||| || || | | | |||| ||| || ||||| || |||| Sbjct 3522 TGA--AATGCTTCTCCGTTTCTAATAGGACT--TCCTAATGCGCGAATTTGTCCTGCATT 3467 Query 236502 CACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTTCATTGAT 236561 | ||| || || ||||| | || || | ||||| || ||| |||| || Sbjct 3466 AATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTTGTCGCATTAAT 3407 Query 236562 TGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTGTCGGGGT 236621 |||| ||| || | ||||||| |||||| |||||||| || || || || || Sbjct 3406 GGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTGACGAGTAGGAGT 3347 Query 236622 ACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCATTGTA 236681 | || || | |||||| ||||| |||||||||| ||| ||| |||| |||||||| Sbjct 3346 TCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAAATAGCATTGTA 3287 Query 236682 GAA 236684 || Sbjct 3286 AAA 3284 >seq159469 Length=1977 Score = 141 bits (156), Expect = 1e-28 Identities = 291/428 (68%), Gaps = 16/428 (4%) Strand=Plus/Plus Query 236265 GTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAG 236324 ||| |||| |||||| | | |||||||||| ||| | || || || | |||||| | Sbjct 1306 GTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAA 1365 Query 236325 TTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACC 236384 |||||||||| || ||||| || || ||| | ||| ||||| || || | || || Sbjct 1366 ACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCC 1425 Query 236385 ACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACACCAGT 236444 ||||| ||||| ||||| || ||| ||||||||||||| | || || || |||||| Sbjct 1426 GCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGT 1485 Query 236445 GTGACGAAT--CTCACCTGAACGA--ACGACTGCCCCTTCAGCACGAATCGCACCGCCAT 236500 ||| ||| ||||| | | | |||| ||| || ||||| || ||| Sbjct 1486 ATGA--AATGCTTCACCGTTTCTAATAGGACT--TCCTAACGCGCGAATTTGTCCCGCAT 1541 Query 236501 TCACACCGATACCTGCACGCT----TACTAATGTAACTTACAATTGATTTAGCCACTTCA 236556 | | |||||| || ||||| | ||| || || ||||| || ||| || Sbjct 1542 TAATACCGATTCCAGCACGTTGTGATACATATTTA----ACAATAGAGCTAGTAGTAGCA 1597 Query 236557 TTGATTGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTGTC 236616 || || || | ||| || | |||| || |||||| ||||||||||| || || Sbjct 1598 TTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTA 1657 Query 236617 GGGGTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCA 236676 || || || || || | |||||| ||||| |||||||||| ||| ||| |||| |||| Sbjct 1658 GGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCA 1717 Query 236677 TTGTAGAA 236684 || || || Sbjct 1718 TTATAAAA 1725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785060906668800