Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028847.1 Length=170527 Score E Sequences producing significant alignments: (Bits) Value seq30067 179 4e-40 seq159469 176 5e-39 >seq30067 Length=5021 Score = 179 bits (198), Expect = 4e-40 Identities = 309/446 (69%), Gaps = 2/446 (0%) Strand=Plus/Minus Query 143921 TTCATCTGGATTCCGTAGTCCATATGGCGAATACGGTTCTCATCGACACCTTTGTTGTTT 143980 || || || ||| | ||||| | ||| || | | || || || | || |||||||| Sbjct 3717 TTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTT 3658 Query 143981 TTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 144040 || | ||| | | |||||||||||| |||||||| || |||||| || ||| ||||| Sbjct 3657 TTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCT 3598 Query 144041 CCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAAT 144100 || || | | || ||||| ||||| ||||| ||||| | || |||||||| | || Sbjct 3597 CCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAA 3538 Query 144101 GGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATC 144160 || ||| ||| ||||| |||| || | | |||| || ||| || ||||| Sbjct 3537 GGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATT 3478 Query 144161 ATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCA 144220 || | || |||||||| || ||||||| |||| |||| || || ||| ||| Sbjct 3477 TGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTT 3418 Query 144221 GTTTTGTTAATAG-ATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTG 144279 || ||||| | |||| | | | || | |||||| | ||||||||||||||||| Sbjct 3417 GTCGCATTAATGGAATTTAAATTA-TCAGCACATTCAATTAAAACACAAGAACTAAATTG 3359 Query 144280 ACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGAAACCTGACGGGTACT 144339 ||| || || || | |||||| |||||| || ||||||||||||| | | ||| Sbjct 3358 ACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGA 3299 Query 144340 TACAGCATCATAAAAACGAATAATAT 144365 | ||||| ||||||||| ||||| Sbjct 3298 AATAGCATTGTAAAAACGATGAATAT 3273 >seq159469 Length=1977 Score = 176 bits (194), Expect = 5e-39 Identities = 308/446 (69%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 143921 TTCATCTGGATTCCGTAGTCCATATGGCGAATACGGTTCTCATCGACACCTTTGTTGTTT 143980 || || || | | |||| || ||||| || | | || || || | ||| | || ||| Sbjct 1292 TTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTT 1351 Query 143981 TTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 144040 || | ||| | | | |||||||||| |||||||| || |||||| || ||| ||||| Sbjct 1352 TTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCT 1411 Query 144041 CCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAAT 144100 || || | | ||| ||||||||||| ||||| || ||| | || || ||||| | || Sbjct 1412 CCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAA 1471 Query 144101 GGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATC 144160 || ||| ||| ||||| |||| || | | |||| || ||| || ||||| Sbjct 1472 GGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATT 1531 Query 144161 ATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCA 144220 || | || ||||| || || ||||||| || | |||| || || ||| ||| | Sbjct 1532 TGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTA 1591 Query 144221 GTTTTGTTAATAGA-TTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTG 144279 || |||||||| ||| | | | || | ||| || | |||||||||||||| || Sbjct 1592 GTAGCATTAATAGAGTTTAAATTA-TCAGCACATTCGATTAAAACACAAGAACTAAACTG 1650 Query 144280 ACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGAAACCTGACGGGTACT 144339 ||| || || || ||| |||||| |||||| || ||||||||||||| | | ||| Sbjct 1651 ACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGA 1710 Query 144340 TACAGCATCATAAAAACGAATAATAT 144365 | |||| ||||||||| |||||| Sbjct 1711 AATTGCATTATAAAAACGCTTAATAT 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539583785377200