Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq267235 120 1e-22 >seq267235 Length=1244 Score = 120 bits (132), Expect = 1e-22 Identities = 279/418 (67%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 38818 ATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCG 38877 ||||||||| || ||| ||| | || |||| | | || |||||||| ||||| Sbjct 302 ATAAATTTTACGCCGAAACATCACGTCATAGCATTCATTTTTCATCGTTTTATGAAACCG 361 Query 38878 TTCGCAGATACCATTCGTCTG-GGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCAT 38936 || |||| ||||| ||||| ||| || | ||| ||| |||||| || || || | Sbjct 362 CTCAGAGATGCCATTGGTCTGCGGGCTGTATGCCTT-CGTCCGCGTATGTTCGATATCTT 420 Query 38937 TTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTC 38996 | | | ||||||| ||| | || |||| || | | ||||| |||| Sbjct 421 CGAGTTCCAGGTAAAGCTGATAGGCATGGGTTTCCTTTTTAGCTGAGTATTCTGAGCCTC 480 Query 38997 GGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTAT 39056 ||| || | || || || | || | |||| ||| | |||| | ||| | | Sbjct 481 TGTCGGTCAGGATACGCAATAAGGGAACCACTTGCTCATCATATAATGGCAGCACCTGGT 540 Query 39057 CATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCA 39116 | || | |||||| || ||| | || | ||| |||||| | || ||||| || | Sbjct 541 CGTTTAACATATCGGCTGCAACCAGGGCATTTTTCTCTGTATAGACCTTGGCAAAGGCGA 600 Query 39117 CTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGC 39176 || | || ||||||||||| || || |||||||| ||| || ||||| | || | Sbjct 601 CTCTGGAATAGGTATCAATAAAGGTCTGCTGATAAATTTTACCGACGCCTTTAATGTGCC 660 Query 39177 CCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACC 39234 |||| ||| ||||||| | ||||| |||||||| |||||| ||||||||||||||| Sbjct 661 CCACGTAGTAAGTATCCTCAGAGCCGAGATAGCCCGGGTGTCGCGTTTCAATTTCACC 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158462059312800