Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq159469 170 2e-37 seq30067 165 9e-36 >seq159469 Length=1977 Score = 170 bits (188), Expect = 2e-37 Identities = 297/432 (69%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 142872 CGTAGTCCATATGACGAATACGGTTCTCATCAACGCCTTTGTTGTTTTTCAGAACGAGCA 142931 |||| || |||||||| | | || || |||| ||| | || ||||| | ||| | | Sbjct 1305 CGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATA 1364 Query 142932 GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTC 142991 | |||||||||| |||||||| || |||||| || ||| ||||| || || | | || Sbjct 1365 AACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTC 1424 Query 142992 CACCTTGTGAACATGATTTAACTGCAGTCTGGAAATGCTTCCAGAATGGAATAACACCGG 143051 | ||||||||||| ||||| || ||| | || || || || | || || ||| ||| | Sbjct 1425 CGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAG 1484 Query 143052 TATGTTTGACTTCACCCATACCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGA 143111 |||| ||||||| | | |||| || ||| || ||||| || | || | Sbjct 1485 TATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAA 1544 Query 143112 TACCAATACCTGCACGTTTAGAAATATACTCGATTATTGAGTTAGCAGTTTTATTAATTG 143171 |||| || || ||||||| || | ||| | | || ||| ||| ||| |||||| | Sbjct 1545 TACCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAG 1604 Query 143172 ATTTCAGCGAGTCACCTGCTTCAATAACAACGCAAGAACTAAACTGACGGGTCGGGGTAC 143231 | || | ||| | ||| || | ||| ||||||||||||||||| || || || | Sbjct 1605 AGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTC 1664 Query 143232 GAGCACCAGCCATAATAGGAGTAGGCAATGAAATCTGACGGGTGCTAACAGCATCATAAA 143291 | | |||| |||||| || || || |||||||| | | || || |||| ||||| Sbjct 1665 GTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAA 1724 Query 143292 AACGAATAATAT 143303 |||| |||||| Sbjct 1725 AACGCTTAATAT 1736 >seq30067 Length=5021 Score = 165 bits (182), Expect = 9e-36 Identities = 300/439 (68%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 142865 TGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCAACGCCTTTGTTGTTTTTCAGA 142924 || ||| | ||||| | |||||| | | || || |||| || |||||||||| | | Sbjct 3711 TGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAA 3652 Query 142925 ACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 142984 || | | |||||||||||| |||||||| || |||||| || ||| ||||| || || Sbjct 3651 ACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCT 3592 Query 142985 CGGATTCCACCTTGTGAACATGATTTAACTGCAGTCTGGAAATGCTTCCAGAATGGAATA 143044 | | || ||||| ||||| ||||| || || | || ||||| || | || || ||| Sbjct 3591 CTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATA 3532 Query 143045 ACACCGGTATGTTTGACTTCACCCATACCAATACGAGAACCTTCAGCACGAATCATACCA 143104 ||| ||||| |||| || | | |||| || ||| || ||||| || Sbjct 3531 CAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATTTGTCCT 3472 Query 143105 ACGTTGATACCAATACCTGCACGTTTAGAAATATACTCGATTATTGAGTTAGCAGTTTTA 143164 | || |||||||| || ||||||| |||| ||| | | || ||| ||| || | Sbjct 3471 GCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTTGTCGCA 3412 Query 143165 TTAATTGATTTCAGCGAGTCACCTGCTTCAATAACAACGCAAGAACTAAACTGACGGGTC 143224 ||||| || || | ||| | |||||| | ||| ||||||||||| ||||| || Sbjct 3411 TTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTGACGAGTA 3352 Query 143225 GGGGTACGAGCACCAGCCATAATAGGAGTAGGCAATGAAATCTGACGGGTGCTAACAGCA 143284 || || | | |||| |||||| || || || |||||||| | | || || |||| Sbjct 3351 GGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAAATAGCA 3292 Query 143285 TCATAAAAACGAATAATAT 143303 | ||||||||| ||||| Sbjct 3291 TTGTAAAAACGATGAATAT 3273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539412877774800