Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028894.1 Length=170336 Score E Sequences producing significant alignments: (Bits) Value seq159469 136 4e-27 seq30067 125 8e-24 >seq159469 Length=1977 Score = 136 bits (150), Expect = 4e-27 Identities = 273/403 (68%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 140805 TTTTCTTCAACGCCTTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAA 140864 |||||||||| ||| | || || || | ||| | |||| |||||||||| |||||||| Sbjct 1328 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCAT 1387 Query 140865 ATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACA 140924 || |||||| || ||| ||||| || || | | ||| ||||||||||| ||||| || Sbjct 1388 ATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACG 1447 Query 140925 GCCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTGACTTCACCCATACCG 140984 || |||| || ||||| | || || ||| ||||||||| ||||||| | | Sbjct 1448 GCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTA 1507 Query 140985 ATTTTCGAACCTTCAGCACGAATCATGCCAACGTTGATACCGATACCTGCACGCTTACTG 141044 || ||| || ||||| || | || |||||||| || ||||| | || Sbjct 1508 ATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACG--TTGTG 1565 Query 141045 AT--ATATTCGATGATTGAATTAGCAGTCTTATTGATTGACTTCAGGGAGTCAGCCGCTT 141102 || ||||| | || || ||| ||| ||| || || || | ||||| || Sbjct 1566 ATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATT 1625 Query 141103 CGATAACCACGCAGGAACTGAACTGTCTTGTAGGTGTTCTGGCGCCCGCCATGATAGGTG 141162 |||| | || || ||||| ||||| | ||||| |||| | || | ||| || |||| Sbjct 1626 CGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTG 1685 Query 141163 TGGGCAACGAAACCTGTCGTGTAGATACTGCATCATAAAAACG 141205 | || || |||| | ||||| | ||||| ||||||||| Sbjct 1686 TTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 125 bits (138), Expect = 8e-24 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 140782 CATAGTCCATATGCCTGATACGGTTTTCTTCAACGCCTTTGTTGTTCTTCAGAACGAGTA 140841 ||||||| | ||| | | | |||||||||| || ||||||| || | ||| | || Sbjct 3704 CATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAAACTAATA 3645 Query 140842 AATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTC 140901 ||||||||||||| |||||||| || |||||| || ||| ||||| || || | | | Sbjct 3644 AATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCTCTAACAC 3585 Query 140902 CACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAATAACACCAG 140961 | ||||| ||||| ||||| ||||| |||| |||||||| | || || ||| ||||| Sbjct 3584 CTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATACAACCAG 3525 Query 140962 TATG 140965 |||| Sbjct 3524 TATG 3521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538979278857600