Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq267235 125 2e-24 >seq267235 Length=1244 Score = 125 bits (138), Expect = 2e-24 Identities = 278/417 (67%), Gaps = 0/417 (0%) Strand=Plus/Plus Query 24614 ATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCG 24673 ||||||||| || ||| ||| | || |||| | | || |||||||| ||||| Sbjct 302 ATAAATTTTACGCCGAAACATCACGTCATAGCATTCATTTTTCATCGTTTTATGAAACCG 361 Query 24674 TTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATT 24733 || ||||||| || |||||||| | | |||| || | ||||| ||||| | Sbjct 362 CTCAGAGATGCCATTGGTCTGCGGGCTGTATGCCTTCGTCCGCGTATGTTCGATATCTTC 421 Query 24734 TATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCG 24793 | | | | ||||||| ||| | || |||| || | | ||||| |||| Sbjct 422 GAGTTCCAGGTAAAGCTGATAGGCATGGGTTTCCTTTTTAGCTGAGTATTCTGAGCCTCT 481 Query 24794 GTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATC 24853 ||| || | || || || | || | |||| ||| | |||| | ||| | || Sbjct 482 GTCGGTCAGGATACGCAATAAGGGAACCACTTGCTCATCATATAATGGCAGCACCTGGTC 541 Query 24854 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 24913 || | |||||| || ||| | || | ||| |||||| | || ||||| || || Sbjct 542 GTTTAACATATCGGCTGCAACCAGGGCATTTTTCTCTGTATAGACCTTGGCAAAGGCGAC 601 Query 24914 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 24973 | | || ||||||||||| || || |||||||| ||| || ||||| | || || Sbjct 602 TCTGGAATAGGTATCAATAAAGGTCTGCTGATAAATTTTACCGACGCCTTTAATGTGCCC 661 Query 24974 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACC 25030 ||| ||| ||||||| | ||||| |||||||| |||||| ||||||||||||||| Sbjct 662 CACGTAGTAAGTATCCTCAGAGCCGAGATAGCCCGGGTGTCGCGTTTCAATTTCACC 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113133803577320