Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq159469 131 2e-25 seq30067 131 2e-25 >seq159469 Length=1977 Score = 131 bits (144), Expect = 2e-25 Identities = 272/403 (67%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 143133 TTTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAT 143192 |||||||||| || | || || || | ||| | |||| |||||||||| ||||||||| Sbjct 1328 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCAT 1387 Query 143193 AAAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACA 143252 | |||||| || ||| ||||| || || | | ||| ||||||||||||||||| || Sbjct 1388 ATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACG 1447 Query 143253 GCCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGGCGAACTTCACCCATACCG 143312 || |||| || ||||| | || || ||| ||||||||| ||||||| | | Sbjct 1448 GCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTA 1507 Query 143313 ATTTTCGAACCTTCAGCACGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTG 143372 || ||| || ||||| || | || || ||||| || ||||| | || Sbjct 1508 ATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACG--TTGTG 1565 Query 143373 AT--ATATTCGATGATTGAATTGGCCGTCTTATTAATTGACTTCAGGGAGTCAGCAGCTT 143430 || ||||| | || || | | || |||||| || || | |||||| || Sbjct 1566 ATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATT 1625 Query 143431 CGATAACCACACAGGAACTGAACTGCCTGGTAGGTGTTCTGGCGCCCGCCATGATGGGCG 143490 |||| | ||||| ||||| ||||| | ||||| |||| | || | ||| ||||| | Sbjct 1626 CGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTG 1685 Query 143491 TGGGCAACGAAACCTGTCTTGTGGATACTGCATCATAAAAACG 143533 | || || |||| | || || | ||||| ||||||||| Sbjct 1686 TTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 143094 TTATTAAGCTGGACACCATAGTCCATATGTCTGATACGGTTTTCTTCAACGCCCTTGTTG 143153 ||||||| || | ||||||| | ||| | | | |||||||||| ||| ||||| Sbjct 3720 TTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTG 3661 Query 143154 TTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCA 143213 || || | ||| | ||||||||||||||| |||||||||| |||||| || ||| ||| Sbjct 3660 TTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 3601 Query 143214 GCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAG 143273 || || || | | || ||||| ||||| ||||| ||||| |||| |||||||| | Sbjct 3600 GCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAA 3541 Query 143274 AACGGAATAACACCAGTATG 143293 || || ||| ||||||||| Sbjct 3540 AAAGGTATACAACCAGTATG 3521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540517447279200