Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq159469 241 1e-58 seq30067 221 1e-52 >seq159469 Length=1977 Score = 241 bits (266), Expect = 1e-58 Identities = 324/450 (72%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 43552 CATTAGATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACC 43611 ||||| | ||| | ||||| | ||||| |||||||| | | |||||||| | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 43612 TTTGTTATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 43671 | | |||||||| ||||| | | | |||||||||| |||||||| || |||||| || Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 43672 AGTAGCAGCGCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATG 43731 ||| ||||| || || | | ||| |||||||| || ||||| || ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 43732 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 43791 ||| ||||||| ||| ||||||||| | ||||||| | | ||| | ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 43792 GGCACGAATCATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAAT 43851 || ||||| || | |||||||| ||||||||||||| || | ||||| |||||| Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAAT 1581 Query 43852 TGA---AGCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACA 43908 || || | ||| ||| ||||| ||||| |||| | || || | |||||| Sbjct 1582 AGAGCTAGTAGTAGC---ATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACA 1638 Query 43909 TGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 43968 ||||||||||| ||||| ||||| || |||| |||||| || |||||||||||||| Sbjct 1639 AGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAAT 1698 Query 43969 CTGTCGAGTAGATACTGCTTCATAAAAACG 43998 | |||||| | ||| | ||||||||| Sbjct 1699 TTTAAAAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 221 bits (244), Expect = 1e-52 Identities = 314/439 (72%), Gaps = 2/439 (0%) Strand=Plus/Minus Query 43561 ATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATT 43620 ||| | ||||| |||| || | |||||| | | |||||||| | || |||| || Sbjct 3718 ATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTT 3659 Query 43621 TTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 43680 ||| ||||| | | |||||||||||| |||||||| || |||||| || ||| ||||| Sbjct 3658 TTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGC 3599 Query 43681 GCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 43740 || || | || || ||||| || || ||||| ||||| | ||||||||||| |||| Sbjct 3598 TCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAA 3539 Query 43741 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAAT 43800 ||| ||| ||||||||| | |||| || | | ||| | ||| || ||||| Sbjct 3538 AGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAAT 3479 Query 43801 CATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGAAGCGGA 43860 || | |||||||||||||||||||||| ||| | ||||| |||||| || | Sbjct 3478 TTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGT 3419 Query 43861 AGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTG 43920 | | ||| || || ||||| |||| | ||||| | |||||| |||||||| || Sbjct 3418 TGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTG 3359 Query 43921 TCGAGTCGGAGTAC-GACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAG 43979 ||||| ||||| | ||| |||| |||||| || |||||||||||||| | ||||| Sbjct 3358 ACGAGTAGGAGTTCTGAC-TCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAG 3300 Query 43980 ATACTGCTTCATAAAAACG 43998 | | || | |||||||| Sbjct 3299 AAATAGCATTGTAAAAACG 3281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529364143744800