Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq30067 188 8e-43 seq159469 152 6e-32 seq493767 107 2e-18 seq408088 95.1 1e-14 >seq30067 Length=5021 Score = 188 bits (208), Expect = 8e-43 Identities = 618/946 (65%), Gaps = 36/946 (4%) Strand=Plus/Minus Query 144759 AGCTTCTTTTACAGGATAATCCTGATAGTCTAAAAGATTATCTAGTGCACGAACCATTAC 144818 |||| || || ||||||| ||||| || || | | |||||||||||| || || Sbjct 4207 AGCTGCTAATATCGGATAATTTTGATATTCCAATATTTCATCTAGTGCACGTACAGATAA 4148 Query 144819 TGAAGCTAATTCGTTAATTGTATCTTGGTCTTGATAATCAAACGAATCTAGAACATACGC 144878 | || |||||| |||| | |||| | ||| | || | ||| | | | || Sbjct 4147 TATAGATAATTCTTTAAAT---TCTT---CAAGATTTTTAATAGTTCCTAAATTAAAAGC 4094 Query 144879 AGCTAATGTACATAATGCAATTTCTGGGTC---ATCTGAACCAACAT------CTTTAGT 144929 | ||||||||| | ||| |||||| ||| ||| || | || ||||||| Sbjct 4093 TGATAATGTACAAAGTGCTATTTCTCCGTCTGTATCATAAATATTATTTAGCGCTTTAGT 4034 Query 144930 AGGTAAAGCAATCTCACAACATAAGTTACTTTGTTTAATAGGCGCCACTTCTTGAATAAA 144989 ||||| | ||| || | ||||| ||| |||||| || || | | ||| || |||| Sbjct 4033 TGGTAATGTAATTTCCAAGCATAAATTAGATTGTTTTATTGGAGATAATTCAGGATTAAA 3974 Query 144990 TGGACCATATTTGTTTGTGTTATCTACAAAGAAAGGATAAATTCGTGCGGTGCCAGAACG 145049 || || || | || | ||||||| |||||| ||| | || | | Sbjct 3973 TGAACTATGTGAATTACAATGATCTACATTTTGTATATAAATACGTCCAGTAGATGTTCT 3914 Query 145050 TTCAGTGAAAAATGATTCAAAC-AAATCTAAAGCTTTGATTCGTTTTTTACGAATTACTG 145108 ||| || | ||| | | ||| |||||||| ||||| | | |||||| | || | Sbjct 3913 TTCC-TGCATAATCAATGAAAATAAATCTAATGCTTTAACTGTTTTTTTTCTTATCTTTT 3855 Query 145109 GAtttttttC-TAGTGATTCATAAATCTCTTTAAACTTTATTCTATCAGTAAAATACGAA 145167 |||||||| || ||| | ||| || |||| ||| ||| || || || |||| | Sbjct 3854 TGTTTTTTTCATATTGAAT-ATATATTTCTTCAAATTTTTTTTGATTAGAAAAAAATACT 3796 Query 145168 TTATATAATTCATTATTATAGACATC---AGGACTAAAAAGAGTAATGTAATCGTTTTTA 145224 | |||||| ||| | ||||| ||||||||| || || || | | || | Sbjct 3795 TCATATAACTCAGGA------ACATCGGAAGGACTAAATAGTGTTATTTGGT--TTCCTG 3744 Query 145225 ATCAGA--CGTTCAATCATCAAATCATTGATTTGAATTCCATAATCAAGATGCCTGATTC 145282 || | | | || | ||| || | ||| ||||||||| |||| || | ||| | | || Sbjct 3743 ATAACATTCTTTGATACATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTC 3684 Query 145283 GATTTTCTTCTACGCCTTTGTTGTTTTTAAGGACTAAAAGATTTTCTGCTTCAAGGTGCC 145342 ||||||||| | || |||||||||| | ||||| | |||||| |||||| |||| Sbjct 3683 TATTTTCTTCAATTCCCCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCC 3624 Query 145343 ACATTGGGTAATATAATGTTGCCGCACCACCACGAATTCCACCTTGAGAACAACTTTTAA 145402 | ||||| ||| | | ||||| || ||||| | || || |||||||||||| ||| | Sbjct 3623 ATATTGGATAAAAAATAGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTA 3564 Query 145403 CAGAAGCCAAGTGAGT-TTTCCAGAATGGAATAACACCCGTATGCCGCACTTCACCGTGA 145461 ||| || | | | ||| | || || ||| ||| ||||| |||| |||| Sbjct 3563 CAG-CGCTTTGAAAATGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTT 3505 Query 145462 CCAATCTTAGAACCTTCAGCGCGATACATTCCGGCGTTAACACCAATACCAGCGCGTTTA 145521 | ||| | ||| |||||| ||| || |||| |||||| ||||| |||| Sbjct 3504 CTAATAGGACTTCCTAATGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGG 3445 Query 145522 CTGATATATTTGATAAT-GCTTTCGTTCACTTTGTTAATTGAATTTAGCGAATCGCCACC 145580 | |||||| | ||| | | ||| | ||||| ||||||| ||| ||| Sbjct 3444 GAAACATATTTAACAATAGAGCTAGTTGTC-GCATTAATGGAATTTAAATTATCAGCACA 3386 Query 145581 TTCAATTACTACACATGAACTGAATTGACGAGTTGGTGTACGTACACCTGCCATAATAGG 145640 |||||||| ||||| ||||| ||||||||||| || || | || || | |||||| || Sbjct 3385 TTCAATTAAAACACAAGAACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGG 3326 Query 145641 AGTAGGCAAAGAAATTTGACGTTTTGATACAGCATTATAAAAACGA 145686 || || || ||||||| | | || | |||||| ||||||||| Sbjct 3325 TGTTGGTAATGAAATTTTAAAAGTAGAAATAGCATTGTAAAAACGA 3280 >seq159469 Length=1977 Score = 152 bits (168), Expect = 6e-32 Identities = 516/790 (65%), Gaps = 23/790 (3%) Strand=Plus/Plus Query 144923 CTTTAGTAGGTAAAGCAATCTCACAACATAAGTTACTTTGTTTAATAGGCGCCACTTCTT 144982 ||||||| ||||| | ||| || ||||||| ||| |||| | || || | | | | Sbjct 969 CTTTAGTGGGTAATGTAATTTCTAAACATAAATTAGATTGTCTTATTGGAGATAATGCAG 1028 Query 144983 GAATAAATGGACCATATTTGTTTGTGTTATCTACAAAGAAAGGATAAATTCGTGCGGTGC 145042 || |||||| || || | || | ||||||| |||||| ||| | ||| Sbjct 1029 GATTAAATGAACTATGTGAATTACAATGATCTACATTTTGTATATAAATACGTCCAGTGG 1088 Query 145043 CAGAACGTTCAGTGAAAAATGATTCAAACAA-ATCTAAAGCTTTGATTCGTTTTTTACGA 145101 || | ||| || | || | | ||| || ||||| ||||| |||| |||||| | Sbjct 1089 AAGTTCTTTCT-TGCATCATTAATGAAAAAAGATCTAGTGCTTTAATTCTTTTTTTTCTT 1147 Query 145102 ATTACTGGAtttttttC-TAGTGATTCATAAATCTCTTTAAACTTTATTCTATCAGTAAA 145160 || | || |||||| || ||| | ||| || |||| ||| ||| || ||| | ||| Sbjct 1148 ATATTTTTATCTTTTTCATATTGAAT-ATACATTTCTTCAAATTTTTTTTGATCTGAAAA 1206 Query 145161 ATACGAATTATATAATTCATTATTATAGACATCAGGACTAAAAAGAGTAATGTAATCGTT 145220 | | | |||| |||| | || || ||||||||| | || || ||| Sbjct 1207 AAATACTTCGTATAGTTCAGGAACAT---CAGAAGGACTAAATAATGTTATTATATCTCC 1263 Query 145221 TTTAATCAGACGTTCAATCATCAAATCATTGATTTGAATTCCATAATCAAGATGCCTGAT 145280 | | || | || | ||| || | ||| ||||||| | | ||||||| ||| | | Sbjct 1264 TGATAACATTCTTTGATACATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCAC 1323 Query 145281 TCGATTTTCTTCTACGCCTTTGTTGTTTTTAAGGACTAAAAGATTTTCTGCTTCAAGGTG 145340 || ||||||||| | ||| | || ||||| | ||||| | | |||| |||||| || Sbjct 1324 TCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATG 1383 Query 145341 CCACATTGGGTAATATAATGTTGCCGCACCACCACGAATTCCACCTTGAGAACAACTTTT 145400 ||| ||||| ||| | | ||||| || || || | | ||| ||||| ||||| ||| Sbjct 1384 CCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTT 1443 Query 145401 AACAGAAGCCAAGTGAGT-TTTCCAGAATGGAATAACACCCGTATGCCGCACTTCACCGT 145459 || | | | | ||| ||| | || || ||| ||| ||||| ||||||||| Sbjct 1444 TACGGCA-CTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGT 1502 Query 145460 GACCAATCTTAGAACCTTCAGCGCGATACATTCCGGCGTTAACACCAATACCAGCGCGTT 145519 | ||| | ||| |||||| ||| || |||| ||| || ||||| |||| Sbjct 1503 TTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTT 1562 Query 145520 TACTGATA--TATTTGATAAT---GCTT-TCGTT-CACTTTGTTAATTGAATTTAGCGAA 145572 ||||| ||||| | ||| ||| | || || ||||| || |||| | Sbjct 1563 G--TGATACATATTTAACAATAGAGCTAGTAGTAGCA-----TTAATAGAGTTTAAATTA 1615 Query 145573 TCGCCACCTTCAATTACTACACATGAACTGAATTGACGAGTTGGTGTACGTACACCTGCC 145632 || ||| ||| |||| ||||| ||||| || |||||||| || || ||||| || | | Sbjct 1616 TCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGAC 1675 Query 145633 ATAATAGGAGTAGGCAAAGAAATTTGACGTTTTGATACAGCATTATAAAAACGAATAATG 145692 ||||| || || || || ||||||| | | || | |||||||||||||| |||| Sbjct 1676 ATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAAAACGCTTAATA 1735 Query 145693 TGTTTCAATC 145702 | |||| || Sbjct 1736 TAATTCATTC 1745 >seq493767 Length=615 Score = 107 bits (118), Expect = 2e-18 Identities = 196/280 (70%), Gaps = 14/280 (5%) Strand=Plus/Minus Query 143171 ATAATATGAGTGTAAGAACGACTATGGATTGTCTCAGAAAACGTCCATGTTTGAATCCAT 143230 || |||||||| |||||||| ||| || || || ||||| | |||||||| ||||||| Sbjct 404 ATTATATGAGTATAAGAACGTGAATGAATAGTTTCTGAAAAAGACCATGTTTCAATCCAT 345 Query 143231 GTATCCAATGACGGGTCTGAAACTAATGCCGCTAGCACCGC---AGCAGGTGCACGTCCT 143287 || |||| | || |||| |||| | || | || | ||| | |||| Sbjct 344 GTTTCCAGTTCTGGAATAGAAA-TAATA--GGTAAAAAAGCTATATTAGGACTTCTTCCT 288 Query 143288 TGAATAGAATCCAAAAGACTTTGATATTTTAAATTGTTGATGAAAATAT---TTTGACGA 143344 ||||| ||||| | | |||||||||||||||| | || ||||| | ||| | || Sbjct 287 TGAATTGAATCAAGTAATGTTTGATATTTTAAATTACTAATAAAAATGTGTTTTTCATGA 228 Query 143345 TACGCCGGTAGTTTTTCGAATTGAGCTCGGTCAGTCATTAAGTTG-ACTTCTTCAGGCCG 143403 | ||||||| |||| || | ||| || | | ||| | | ||| ||||| | Sbjct 227 T---CCGGTAGATTTTGAAAATCTATTCGATCTCT-AGAAAGATCTATTTCCTCAGGTCT 172 Query 143404 CCAGAAAAATGATAATTGTTTTTCAGTTAGTTCTTCAAAT 143443 ||| ||||||||||||||||||||| |||||| ||||||| Sbjct 171 CCAAAAAAATGATAATTGTTTTTCAATTAGTTGTTCAAAT 132 >seq408088 Length=780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 75474 TTGGTGACCCTTGCCGGATTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTC-TAC 75532 ||| || ||||||| ||||| |||||||||||| ||| ||||||||| |||||||| ||| Sbjct 697 TTGATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTAC 638 Query 75533 CTCTGAGCTAAAGGGCC 75549 | ||||||||||||||| Sbjct 637 CACTGAGCTAAAGGGCC 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538821031077600