Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq267235 120 1e-22 >seq267235 Length=1244 Score = 120 bits (132), Expect = 1e-22 Identities = 279/418 (67%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 40881 ATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCG 40940 ||||||||| || ||| ||| | || |||| | | || |||||||| ||||| Sbjct 302 ATAAATTTTACGCCGAAACATCACGTCATAGCATTCATTTTTCATCGTTTTATGAAACCG 361 Query 40941 TTCGCAGATACCATTCGTCTG-GGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCAT 40999 || |||| ||||| ||||| ||| || | ||| ||| |||||| || || || | Sbjct 362 CTCAGAGATGCCATTGGTCTGCGGGCTGTATGCCTT-CGTCCGCGTATGTTCGATATCTT 420 Query 41000 TTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTC 41059 | | | ||||||| ||| | || |||| || | | ||||| |||| Sbjct 421 CGAGTTCCAGGTAAAGCTGATAGGCATGGGTTTCCTTTTTAGCTGAGTATTCTGAGCCTC 480 Query 41060 GGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTAT 41119 ||| || | || || || | || | |||| ||| | |||| | ||| | | Sbjct 481 TGTCGGTCAGGATACGCAATAAGGGAACCACTTGCTCATCATATAATGGCAGCACCTGGT 540 Query 41120 CATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCA 41179 | || | |||||| || ||| | || | ||| |||||| | || ||||| || | Sbjct 541 CGTTTAACATATCGGCTGCAACCAGGGCATTTTTCTCTGTATAGACCTTGGCAAAGGCGA 600 Query 41180 CTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGC 41239 || | || ||||||||||| || || |||||||| ||| || ||||| | || | Sbjct 601 CTCTGGAATAGGTATCAATAAAGGTCTGCTGATAAATTTTACCGACGCCTTTAATGTGCC 660 Query 41240 CCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACC 41297 |||| ||| ||||||| | ||||| |||||||| |||||| ||||||||||||||| Sbjct 661 CCACGTAGTAAGTATCCTCAGAGCCGAGATAGCCCGGGTGTCGCGTTTCAATTTCACC 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164988644129820