Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028957.1 Length=171541 Score E Sequences producing significant alignments: (Bits) Value seq159469 127 2e-24 seq30067 127 2e-24 >seq159469 Length=1977 Score = 127 bits (140), Expect = 2e-24 Identities = 271/403 (67%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 142878 TTTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGCAAATTTTCAACTTCCAAATGCCAT 142937 |||||||||| || | || || || | ||| | ||| |||||||||| ||||||||| Sbjct 1328 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCAT 1387 Query 142938 AAAGGATAATAAGCAGTAGCAGCGCCGCCCCGGATTCCACCTTGTGAACAGGATTTAACA 142997 | |||||| || ||| ||||| || || | | ||| ||||||||||||||||| || Sbjct 1388 ATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACG 1447 Query 142998 GCCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGACGAACTTCACCCATACCG 143057 || |||| || ||||| | || || ||| |||||||||| ||||||| | | Sbjct 1448 GCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTA 1507 Query 143058 ATTTTCGAACCTTCAGCACGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTG 143117 || ||| || ||||| || | || || ||||| || ||||| | || Sbjct 1508 ATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACG--TTGTG 1565 Query 143118 AT--ATATTCGATGATTGAATTGGCAGTCTTATTGATTGACTTCAGGGAGTCTGCAGCTT 143175 || ||||| | || || | | ||| ||| || || || | || ||| || Sbjct 1566 ATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATT 1625 Query 143176 CGATAACCACGCAGGAACTGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTG 143235 |||| | || || ||||| ||||| || ||||| |||| | || | ||| || |||| Sbjct 1626 CGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTG 1685 Query 143236 TGGGCAACGAAACCTGTCTTGTGGATACTGCATCATaaaaacg 143278 | || || |||| | || || | ||||| ||||||||| Sbjct 1686 TTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 142832 CATCAAGTTATTCAACTGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCC 142891 ||| || ||||| | || | ||||||| | ||| | | | |||||||||| || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 142892 CTTGTTGTTCTTCAGAACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGC 142951 | ||||||| || | ||| | |||||||||||||| |||||||||| |||||| || Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 142952 AGTAGCAGCGCCGCCCCGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATG 143011 ||| ||||| || || | | || ||||| ||||| ||||| ||||| |||| ||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 143012 TTTCCAGAACGGAATAACACCAGTATGA 143039 ||| | || || ||| |||||||||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGA 3520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542793050355600