Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq30067 156 5e-33 seq159469 152 6e-32 >seq30067 Length=5021 Score = 156 bits (172), Expect = 5e-33 Identities = 306/451 (68%), Gaps = 6/451 (1%) Strand=Plus/Minus Query 77171 ATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATACGGTTATTCTCAAC 77230 |||||| || | |||| |||| |||| || | ||||| | | || | |||| Sbjct 3730 ATACATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAAT 3671 Query 77231 ACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATA 77290 || |||||||||| | ||| | | ||||||||||| |||||||| || |||||| | Sbjct 3670 TCCCCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAA 3611 Query 77291 CAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAAT 77350 | |||||||| ||||| | ||| || ||||| ||||| ||||| || || | |||| Sbjct 3610 AATAGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAA 3551 Query 77351 ATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACC 77410 |||||| | || || || || ||||| | |||||| || | || | || Sbjct 3550 ATGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCC 3491 Query 77411 CATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCAC 77470 | ||||||||| ||||| ||||||| ||| || || || ||||| |||| ||| || || Sbjct 3490 TAATGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAAC 3431 Query 77471 GATCGCAGAG---GTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTAC 77527 || |||| ||| ||||| | ||| | |||| | ||||||| | || Sbjct 3430 AAT---AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAAC 3374 Query 77528 GCAACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGGTAACGA 77587 ||| ||| ||||| |||||||| | || || | |||||| || || ||||| || Sbjct 3373 ACAAGAACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGA 3314 Query 77588 CAGCTTACGATCCGAAATTGCGTTGTAGAAA 77618 | ||| | ||||| || ||||| ||| Sbjct 3313 AATTTTAAAAGTAGAAATAGCATTGTAAAAA 3283 >seq159469 Length=1977 Score = 152 bits (168), Expect = 6e-32 Identities = 305/451 (68%), Gaps = 6/451 (1%) Strand=Plus/Plus Query 77171 ATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATACGGTTATTCTCAAC 77230 |||||| || | |||| |||| | ||||| | ||||| | | || | |||| Sbjct 1279 ATACATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAAT 1338 Query 77231 ACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATA 77290 ||| | || ||||| | ||| | | |||||||||| |||||||| || |||||| | Sbjct 1339 TCCTCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAA 1398 Query 77291 CAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAAT 77350 | |||||||| || || | || || ||||||||||||||||| || || | |||| Sbjct 1399 AATAGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAA 1458 Query 77351 ATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACC 77410 ||||| | || || || || ||||| | ||||||||| | || | || Sbjct 1459 GTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCC 1518 Query 77411 CATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCAC 77470 | |||||||| ||||| ||||||| |||||| || || |||||||| | ||| || || Sbjct 1519 TAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAAC 1578 Query 77471 GATCGCAGAG---GTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTAC 77527 || |||| || |||||| | ||| | |||| | |||| || | || Sbjct 1579 AAT---AGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAAC 1635 Query 77528 GCAACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGGTAACGA 77587 ||| ||||||||| |||||||| || || || | |||||| || || ||||| || Sbjct 1636 ACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGA 1695 Query 77588 CAGCTTACGATCCGAAATTGCGTTGTAGAAA 77618 | ||| | |||||||| || || ||| Sbjct 1696 AATTTTAAAAGTAGAAATTGCATTATAAAAA 1726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562248032428800