Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq30067 188 8e-43 >seq30067 Length=5021 Score = 188 bits (208), Expect = 8e-43 Identities = 313/449 (70%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 41865 ATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCAACCCCAATTA 41924 ||||| ||||||||| |||| |||||||| | || ||||||| ||||| ||||||| Sbjct 3273 ATATTCATCGTTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTA 3332 Query 41925 TGGCAGGTGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTG 41984 || | || | | ||||| ||||| || || | |||||| | |||||| | || Sbjct 3333 TGTCTGGAGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTG 3392 Query 41985 ATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATATATTTCTAAAC 42041 || ||||| || ||||| | |||| ||| || ||| || ||||| |||| ||| Sbjct 3393 ATAATTTAAATTCCATTAATGCGACAACT--AGC-TCTATTGTTAAATATGTTTCCCAAC 3449 Query 42042 GAGCTGGTATCGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGG 42101 | ||||| || ||||| || | || |||| ||| ||| | || | | | Sbjct 3450 GTGCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACG 3509 Query 42102 GTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAAT 42161 | |||| ||||| ||| ||| || || | |||||||| |||| || ||||||| Sbjct 3510 GAGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAAT 3569 Query 42162 CTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACT 42221 ||||||||||||| ||| || | ||||| ||||| || | |||||| || ||||| | Sbjct 3570 CTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATT 3629 Query 42222 TAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTC 42281 | ||||| || || |||||||| | ||||| |||| || | || ||||| | | | Sbjct 3630 TTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTAC 3689 Query 42282 GACATATGGACTACGGAATTCAGATTAAT 42310 | ||| | ||||| | |||||| |||||| Sbjct 3690 GTCATGTCGACTATGCAATTCAAATTAAT 3718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534026123343600