Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq40887 93.3 3e-14 seq90319 91.5 1e-13 seq102355 89.7 4e-13 seq75854 86.0 4e-12 >seq40887 Length=4418 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || ||||| || || ||| || || | || || |||||| || Sbjct 2301 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACAATCACCTTGGAAGTGGAAAGCTCC 2360 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| |||||| |||||||||||| |||| || | Sbjct 2361 GACACAATCGACAAT--GTCAAAGCTAAAATACAAGACAAAGAAGGTATTCCCCCAGATC 2418 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || || ||||||||||| | || || | || | ||| | || |||| Sbjct 2419 AGCAACGACTTATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACCTTAGCTGACTACA 2478 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | ||| | || | ||| | ||||| || Sbjct 2479 ACATCCAGAAGGAATCCACCCTCCATCTCGTCCTCCGTCTCCGTGGAGG 2527 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||||| || || ||| ||| || | || ||||||||| | Sbjct 2073 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCTTGGAAGTCGAAAGCTCT 2132 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| ||||| ||||| ||||| | || || | Sbjct 2133 GACACCATCGACAAC--GTCAAAGCTAAAATCCAAGACAAGGAAGGGATCCCACCAGACC 2190 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || |||| || || ||||| ||||| | || |||| |||| | | |||| |||| Sbjct 2191 AACAGAGGTTGATCTTCGCCGGTAAACAGCTTGAAGACGGCCGCACCCTCGCCGACTACA 2250 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| |||||| ||| | ||| | || | || | ||||| ||| Sbjct 2251 ACATCCAGAAAGAGTCCACCCTCCATCTCGTCCTCCGCCTCCGTGGTGGC 2300 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || | || || ||| ||||| | || || |||||| || Sbjct 2757 ATGCAGATCTTTGTGAAGACCTTGACCGGAAAAACCATTACCTTGGAAGTTGAAAGCTCC 2816 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||| || || || ||||| | || ||| | Sbjct 2817 GACACCATCGATAAT--GTGAAAGCAAAGATCCAAGATAAGGAAGGGATCCCACCGGACC 2874 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||||||||| ||||| |||| || | ||| |||| |||| Sbjct 2875 AGCAGAGGCTTATCTTCGCCGGAAAACAGTTGGAGGACGGCCGGACGTTGGCCGACTACA 2934 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | ||| ||||| | || | ||||| || Sbjct 2935 ACATCCAGAAGGAGTCGACACTTCATCTGGTTCTCCGGCTCCGTGGTGG 2983 >seq90319 Length=2932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||||||||| || || || || | || ||||||||| || Sbjct 1625 ATGCAAATATTCGTCAAAACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAAAGCTCC 1566 Query 27850 GACGATGTACAATCGGTCAAACAAAA---AATAGCC--GACAAAGAAGGTGTTCCGATGG 27904 ||| || |||| | | ||| || | || ||||| |||||| | || | Sbjct 1565 GAC-----ACCATCGATAACGTGAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAG 1511 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| | || || || ||||||||||| | || |||| || | | | |||| | Sbjct 1510 ATCAGCAAAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCCGTACCCTCGCCGACT 1451 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||| ||| || | |||||||| | ||| | ||||| ||| Sbjct 1450 ACAACATCCAAAAGGAGTCAACCCTCCATTTGGTCCTCCGTCTCCGTGGTGGC 1398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || |||||||| || || || | || ||||| ||| || Sbjct 1853 ATGCAAATCTTCGTTAAGACCCTTACTGGTAAGACCATCACTCTCGAGGTCGAGAGCTCC 1794 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| ||||| ||||| ||||| |||| || | Sbjct 1793 GACACCATAGACAAC--GTCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCCCCAGACC 1736 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | || || |||||||| ||| | || |||| || | ||| ||||||||| Sbjct 1735 AGCAAAGACTTATCTTCGCCGGAAAGCAACTCGAGGACGGCCGGACTTTGGCCGATTACA 1676 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | ||| | || | ||| | ||||| || Sbjct 1675 ACATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTTCGTGGAGG 1627 >seq102355 Length=2708 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || || ||||| || || | || ||||| || || Sbjct 629 ATGCAGATTTTTGTGAAAACCCTAACGGGGAAGACGATAACTCTCGAAGTCGAGAGTTCC 688 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| ||||| || ||| || ||| ||||| ||||| |||| ||| | Sbjct 689 GATACGATCGACAAT--GTTAAAACGAAGATACAGGACAAGGAAGGAATTCCTCCGGATC 746 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | || || ||||| ||||| | || |||| || | | ||||||||| Sbjct 747 AACAACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCTCGCCGATTACA 806 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | ||||||||||| || | ||| | ||| | ||| | ||||| ||| Sbjct 807 ATATCCAAAAAGAATCGACGCTCCATCTCGTTCTCCGTCTTCGTGGAGGC 856 >seq75854 Length=3247 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || || || || | ||||| ||| || ||| | || || ||||| | Sbjct 2568 AATGCAGATCTTCGTTAAGACGTTAACTGGAAAAACAATCACATTGGAGGTTGAAAGTTC 2509 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || |||| ||||| || || || ||| ||||||||||| |||| ||| Sbjct 2508 TGATACGATCGACAAT--GTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCGGAT 2451 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | || ||||| ||||| || ||||| || | | | || ||||||| Sbjct 2450 CAACAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGAACTTTAGCCGATTAT 2391 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||||||||| |||||||| | ||| | || || Sbjct 2390 AACATCCAAAAGGAATCGACTTTGCATCTGGTTTTGAGGTTGAGGGGAGG 2341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 352062646973970