Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq102355 95.1 1e-14 seq35420 93.3 4e-14 seq40887 91.5 1e-13 seq90807 89.7 4e-13 seq107820 87.8 2e-12 >seq102355 Length=2708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| ||||| || || || ||||| || || || |||| |||||||| Sbjct 1060 ATGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTG 1001 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || ||||| ||||| |||| || | | || |||| | ||| | | Sbjct 1000 TTTACCGGCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCTTCCTTGT-CTTGAATCT 942 Query 39201 CTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTC 39256 ||| | ||| | | | || || ||| |||||| |||| |||||| | |||| Sbjct 941 TTGTCTTCACGTTGTCGATTGTGTCCGAGCT---CTCCACCTCCAACGTGATCGTCTTTC 885 Query 39257 CCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| ||||| || ||||||||||| Sbjct 884 CGGTCAGGGTTTTGACGAAGATTTGCAT 857 >seq35420 Length=4697 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAA-ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||||| |||| || ||| | ||| ||| || || |||||| || || || || ||||| Sbjct 1448 CCTCCCCTTA-GCCTAAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGGC 1390 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| || || |||| |||||||| || || || || ||||| | ||||||||| | ||| Sbjct 1389 AAGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGG 1330 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCA 39235 | || || ||||| |||||| ||| | ||| | | | || ||| || | Sbjct 1329 GATGCCTTCCTTGTCTTGGATTTTGGCTTTCA-CGTTGTCGATGGTGTCGGAGCTTTCGA 1271 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 | || | ||||| | || || || || || ||||| ||||||||||||| || Sbjct 1270 CCTCTAGGGTGATGGTCTTACCGGTGAGGGTCTTAACGAAGATTTGCATCTGTA 1217 >seq40887 Length=4418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/210 (71%), Gaps = 10/210 (5%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || ||||| || || || |||| |||||||| Sbjct 2276 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTG 2217 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTT 39199 ||| || || || || | | ||| ||||| |||||| | || || ||||| ||||| Sbjct 2216 TTTACCGGCGAAGATCAACCTCTGTTGGTCTGGTGGGATCCCT-TCCTTGTCTTGGATTT 2158 Query 39200 TCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTT 39255 | ||||| ||| | | | || || ||| || || |||| |||||| ||||| Sbjct 2157 TAGCTTTGA-CGTTGTCGATGGTGTCAGAGCT---TTCGACTTCCAAGGTGATAGTTTTT 2102 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || || || ||||| || |||||||||||| Sbjct 2101 CCGGTGAGAGTTTTGACGAAGATTTGCATC 2072 >seq90807 Length=2923 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || || ||||||||||||| |||| ||| Sbjct 1389 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTACCGTCTTCA 1330 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || || ||||| ||||| | || | || || |||||| | Sbjct 1329 AGCTGCTTTCCGGCGAAGATGAGTCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCCTGG 1270 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||| || | | | | ||| ||| || || || |||| ||||| | || Sbjct 1269 ATCTTCGCCTTCACATTGTCGATCGTGTCGGAGGATTCAACCTCCAAGGTGATCGTCTTA 1210 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || ||||| || ||||| ||||| Sbjct 1209 CCCGTTAGGGTTTTCACGAAGATCTGCAT 1181 >seq107820 Length=2620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||||||| |||| |||| ||||| ||||| || || || Sbjct 2059 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCTGCCGTCCTCAAGTTGTTTCCCGGCGAA 2118 Query 39153 TATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 |||||||||||||||| ||||||| | || || ||||| ||| ||| || | Sbjct 2119 AATAAGACGCTGCTGGTCCGGTGGG-ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACAT 2177 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| || || || |||| ||| || | || || || || ||||| | Sbjct 2178 TGTCGATTGTGTCGGAGGATTCAACCTCCAACGTAATCGTCTTCCCAGTTAGGGTTTTCA 2237 Query 39272 CAAAGATTTGCATCTTTACGCCGA 39295 | ||||| ||||| ||| ||||| Sbjct 2238 CGAAGATCTGCATTTTT--GCCGA 2259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424959087928430