Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq48246 172 5e-38 seq107321 145 6e-30 >seq48246 Length=4099 Score = 172 bits (190), Expect = 5e-38 Identities = 391/578 (68%), Gaps = 9/578 (2%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 ||||||||||||||||| || || || || |||| || | || | |||||| || || || Sbjct 1574 AAACACGCAAAATCACAGTGTAATCCCTCATCTC-GCGAGATTAATTCGTTCGAGAAGGT 1632 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 |||||| ||||| || || | || || | |||||| || ||| || || ||||| Sbjct 1633 TAATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAA 1692 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACC-CGAACGAGCTGGCTTTGT 4722 ||| || ||||| ||| || || || | |||| | | | |||| || | | Sbjct 1693 GAAAATCCCTTCAACGCAAGCGAAAGCGA-TAATACGCTCTGCAAACGT-CT--CCGAGC 1748 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 | | |||||||| | ||||| || ||||| |||| ||| |||||||| || | || | Sbjct 1749 CATCGATCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTG 1808 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | || | | | ||||| ||| | ||| | || || | || | || | || | Sbjct 1809 CTCGGAAGAGTCTGCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGT 1868 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 |||| || || || ||||| || || |||||||| |||||||| ||| | || || | Sbjct 1869 ACATCTCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCG 1928 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 |||||||| || || |||| | | ||| |||||| || || || || || Sbjct 1929 CAACTTGAACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGG 1988 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT-TAAGTTTTTTC 5021 | || || || || | || |||| ||||||| | ||| | | || | | | | Sbjct 1989 CGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCC-GTCTGTCAACGAGTCC 2047 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 ||||| | ||||| || ||||| || ||||| | ||||||||||| ||||| ||| Sbjct 2048 CAGTGACGTTGATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCT 2107 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || |||||||| |||||| | ||| |||||||| || Sbjct 2108 TTCTTGTACATTTCCCAAATTTGAGGGTACTGAATTGG 2145 >seq107321 Length=2628 Score = 145 bits (160), Expect = 6e-30 Identities = 415/625 (66%), Gaps = 15/625 (2%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 || ||||| || ||||| |||||||| ||||||| || | |||| |||||| || || || Sbjct 1297 AAGCACGCGAAGTCACAGTGCAAACCCTCGTCTC-GCGAGATCAATTCGTTCGAGAATGT 1239 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACCCAGAA 4661 || || ||||| | |||| ||||| ||||| ||||| ||| | || || || || Sbjct 1238 TAGCCCTGGCATAAGCCCTCGTTTTTTGAGCCAGAATATGGCGCAGAAACTG--CCGGAG 1181 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACC-CGAACGAGCTGGCTTT 4720 ||||| || ||||| ||| || || || | | ||| | | |||| | | | Sbjct 1180 AAGAAGATACCTTCGACGCAAGCGAAAGCGA-TGATCCGTTCTGCGAAGGTTTCAGATCC 1122 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 || |||||| | | ||||| |||||||| |||| | ||| || || || | || Sbjct 1121 ATCG---ATCCATCTGAGGGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGAT 1065 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||| ||| | |||| || || | ||||| || || | || | || || || Sbjct 1064 TGCGCGAAACAGCCTACTCTTCTCGTTGGAGTCTTTGATGTATGATTCGAGAAGCAGACT 1005 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 ||||| || || || || || || || || ||||| |||||||| ||| | || || Sbjct 1004 GTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTC 945 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 | ||||| || || || || | | | | | |||||| ||| || || || Sbjct 944 CGCAACTTGGACCTCTTTCATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGA 885 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTTTTT 5019 ||| || || || || | || |||| || |||||| ||| || ||||| ||| | Sbjct 884 GGCGGCGAAGAATGCGAGGACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGGTTGTC 825 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 ||| || || || | | |||||||| || || | |||||||| || ||||| | Sbjct 824 -CCACTGACGCTGGTCCTGTGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTG 766 Query 5080 CTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTG 5138 ||||||||||||| ||| || | ||| || || || || | || ||| ||||| | Sbjct 765 CTTTTTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGGAACAT-ACAGAATCTATCT 707 Query 5139 TCGTTAGGTGTAAGAAGCGGTTCTT 5163 ||| || | |||||| || |||| Sbjct 706 GGGTTTGGAGCAAGAAGAGGCTCTT 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422489739194630