Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq159469 232 7e-56 seq30067 214 2e-50 seq193075 82.4 8e-11 >seq159469 Length=1977 Score = 232 bits (256), Expect = 7e-56 Identities = 327/458 (71%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 88492 CATCAAATCATTCAGTTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 88551 ||| || | ||| | ||||| | ||||| |||||||| | | |||||||| | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 88552 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 88611 | | |||||||| ||||| | | | |||||||||| |||||||| || |||||| || Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 88612 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 88671 ||| ||||| || || | | ||| || |||||||| ||||| || ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 88672 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 88731 ||| ||||||| ||| |||||||||| | ||||||| | | ||| | ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 88732 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAAT 88791 || ||||| || | |||||||| |||||||| |||| || | ||| | |||||| Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAAT 1581 Query 88792 TGA---AGCAGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCA 88848 || || || ||| ||| ||||| ||||| |||| | || || | ||| || Sbjct 1582 AGAGCTAGTAGTAGCATTA---ATAGAGTTTAAATTATCAGCACATTCGATTAAAACACA 1638 Query 88849 TGAACTAAACTGTCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 88908 ||||||||||| ||||| ||||| || |||| |||||| || ||||| |||||||| Sbjct 1639 AGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAAT 1698 Query 88909 CTGTCGAGTAGATACTGCTTCATAAAAACGAATAACAT 88946 | |||||| | ||| | ||||||||| ||| || Sbjct 1699 TTTAAAAGTAGAAATTGCATTATAAAAACGCTTAATAT 1736 >seq30067 Length=5021 Score = 214 bits (236), Expect = 2e-50 Identities = 328/465 (71%), Gaps = 2/465 (0%) Strand=Plus/Minus Query 88492 CATCAAATCATTCAGTTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 88551 ||| || | ||| | ||||| |||| || | |||||| | | |||||||| | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 88552 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 88611 |||| ||||| ||||| | | |||||||||||| |||||||| || |||||| || Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 88612 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 88671 ||| ||||| || || | || || || || ||||| ||||| || || | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 88672 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 88731 ||| ||||||| ||| |||||||||| | |||| || | | ||| | ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 88732 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAAT 88791 || ||||| || | ||||||||||||||||| |||| ||| | ||| | |||||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 88792 TGAAGCAGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGA 88851 || || | | ||| || || ||||| |||| | ||||| | ||| || || Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 88852 ACTAAACTGTCGAGTTGGAGTAC-GACAACCAGCCATAATAGGAGTTGGCAATGAAATCT 88910 |||||| || ||||| ||||| | ||| |||| |||||| || ||||| |||||||| | Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGAC-TCCAGACATAATTGGTGTTGGTAATGAAATTT 3309 Query 88911 GTCGAGTAGATACTGCTTCATAAAAACGAATAACATGTTTTAATC 88955 |||||| | || | ||||||||| || || |||| || Sbjct 3308 TAAAAGTAGAAATAGCATTGTAAAAACGATGAATATAATTTATTC 3264 >seq193075 Length=1689 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 17188 TTTGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CC 17246 ||| |||||| | | |||| |||| | ||||||||| ||||||| ||||||||||| || Sbjct 185 TTTTAGCGGACAGCGGGAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 244 Query 17247 ATTATACGATATCCGCA 17263 |||||||||| |||||| Sbjct 245 ATTATACGATGTCCGCA 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539973074916000