Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq159469 114 1e-20 seq110075 114 1e-20 seq493767 104 2e-17 seq30067 102 8e-17 >seq159469 Length=1977 Score = 114 bits (126), Expect = 1e-20 Identities = 290/433 (67%), Gaps = 16/433 (4%) Strand=Plus/Plus Query 139618 ATAACGTTC---GAT-CATTAAGTCATTAATCTGGACACCATAATCTAAATGACGAATAC 139673 ||||| ||| ||| |||||| | |||||| || | | ||||| | |||||| | | Sbjct 1266 ATAACATTCTTTGATACATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTC 1325 Query 139674 GGTTTTCATCGATACCTTTATTATTCTTCAGTACGATTAATTTTTCATATTCCAGATGCC 139733 ||||| || || ||| ||||||| || | || | ||| ||||| ||| | ||||| Sbjct 1326 TATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCC 1385 Query 139734 ACATCGGATAATATAATGTCGCCGCACCACCACGTACACCACCTTGTGAACATGATTTCA 139793 | || |||||| | | || || || || || | || || ||||||||||| ||||| | Sbjct 1386 ATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTA 1445 Query 139794 CTGATGCCTGATGAGT-TTTCCAGAATGGAATAACACCAGTGTGACGAACTTCGCCCGCG 139852 | | ||| ||| ||| | || || ||| |||||| ||| |||| || Sbjct 1446 CGGCACTTTGA-AAGTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTT 1504 Query 139853 CCAATTTTAGAACCTTCT---GCACGATACATACCAGCATTAACACCAATACCAGCACGT 139909 | || ||| || | || || ||| || ||||||| ||| || ||||||||| Sbjct 1505 CTAA---TAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGT 1561 Query 139910 TTACTGAT--GTACTTAATAATACATTCGTTTGTCTTGTTAATTGAATCCAGCGAATCAC 139967 | |||| || |||| |||| | | || ||||| || | | |||| Sbjct 1562 T--GTGATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAG 1619 Query 139968 CGCCTTCAATAACAACACAAGAGCTAAACTGACGTGTCGGAGTTCTTACGCCCGCCATAA 140027 | | ||| || | ||||||||| ||||||||||| || ||||||| ||| || | ||||| Sbjct 1620 CACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAA 1679 Query 140028 TCGGAGTAGGTAA 140040 | || || ||||| Sbjct 1680 TGGGTGTTGGTAA 1692 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 138761 GGTGGTTCAATACCATTTGTACTATTCGATACCTGAGAAGACGATTCACAAGGCATTAAA 138820 ||||||||||||||||| || ||| |||| |||||||| | ||| ||||||||||| Sbjct 398 GGTGGTTCAATACCATTGGTTGCATTAGATATTTGAGAAGATGTTTCTGAAGGCATTAAA 457 Query 138821 GCAGATAATGTGCTGTTTCTGATTCCGTATTTTTT 138855 ||||||||||| ||||| | || |||||||| Sbjct 458 GCAGATAATGTTGAATTTCTCAACCCATATTTTTT 492 >seq110075 Length=2584 Score = 114 bits (126), Expect = 1e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 66412 CTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCT 66471 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 103 CTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCT 162 Query 66472 AAGAGTGCATTAA 66484 |||| |||| || Sbjct 163 AAGAACGCATAAA 175 >seq493767 Length=615 Score = 104 bits (114), Expect = 2e-17 Identities = 137/189 (72%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 137299 ATAATATGAGTATAAGAACGAGAATGAATTGTTTCGCTGAATGTCCATGTTTGAACCCAT 137358 || ||||||||||||||||| |||||||| ||||| || | |||||||| || |||| Sbjct 404 ATTATATGAGTATAAGAACGTGAATGAATAGTTTCTGAAAAAGACCATGTTTCAATCCAT 345 Query 137359 GTTTCAAAGCCGACATCAGAGATCAACGGCGCAAATGCCAGAGCTGGAGCTCGTCCTTGA 137418 ||||| | | | ||| || | || ||| || | | ||| || ||||||| Sbjct 344 GTTTCCAGTTCTGGAATAGAAATAATAGGTAAAAAAGCTATATTAGGACTTCTTCCTTGA 285 Query 137419 ATAGAATCAAGCAGTGTCTGATATTTTAAGTTATCGGTAAAAATACCCTTTTCATGTTCC 137478 || |||||||| | ||| ||||||||||| ||| ||||||| |||||||| ||| Sbjct 284 ATTGAATCAAGTAATGTTTGATATTTTAAATTACTAATAAAAATGTGTTTTTCATGATCC 225 Query 137479 TGTA-ATTT 137486 ||| |||| Sbjct 224 GGTAGATTT 216 >seq30067 Length=5021 Score = 102 bits (112), Expect = 8e-17 Identities = 180/260 (69%), Gaps = 8/260 (3%) Strand=Plus/Minus Query 138761 GGTGGTTCAATACCATTTGTACTATTCGATACCTGAGAAGACGATTCACAAGGCATTAAA 138820 |||||||||||||||||||| ||| |||| |||||||||| ||| ||||||||||| Sbjct 4611 GGTGGTTCAATACCATTTGTTGCATTAGATATTTGAGAAGACGTTTCTGAAGGCATTAAA 4552 Query 138821 GCAGATAATGTGCTGTTTCTGATTCCGTATTTTTTCAGATCTTCACGTAATGATTCCCAG 138880 ||||||||||| ||||| | || |||||||| | | ||||||| | | ||| Sbjct 4551 GCAGATAATGTTGAATTTCTTAAACCATATTTTTTAATTTTACAACGTAATAAATTCCAA 4492 Query 138881 TCACAAACTAATTCCGGGGTAACCA-ATTTATCTACAGT---CTTTTTATACCAATCAAT 138936 || || | | || | | || || |||| || | |||||||| ||| || Sbjct 4491 TCTAAATGCAGT----GGTTCATCACATATATCATCAATATCTTTTTTATATGTATCTAT 4436 Query 138937 TGGTAATTCGCCTTGACCATATCGAGTCTCTTTATATAATTCACATGGGCCTTTTTCTTT 138996 ||||||| ||| | || ||| | ||| |||| |||| ||||||||||| Sbjct 4435 AGGTAATTTTCCTAAATAGTAATTAGTATGATTAAATAAAGAGCATGCTCCTTTTTCTTT 4376 Query 138997 AGCTAGTTTAACAGATGCTT 139016 |||| || | |||||||| Sbjct 4375 GGCTAATTCACAAGATGCTT 4356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516397320651600