Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq159469 223 4e-53 seq30067 203 4e-47 >seq159469 Length=1977 Score = 223 bits (246), Expect = 4e-53 Identities = 320/450 (71%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 139466 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139525 ||| || | ||| | ||||| | ||||| |||||||| | | |||||||| | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 139526 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 139585 | | |||||||| ||||| | | | |||||||||| |||||||| || |||||| || Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 139586 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 139645 ||| ||||| || || | | ||| || |||||||| ||||| || ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 139646 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATTTTAGAACCTTC 139705 ||| ||||||| ||| |||||||||| | ||||||| | | ||| | ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 139706 AGCACGAATCATACCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139765 || ||||| || |||||||||| |||||||| |||| || | ||||| |||||| Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAAT 1581 Query 139766 TGA---AGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACGACGCA 139822 || || | ||| ||| ||||| || || ||| | || || | || || Sbjct 1582 AGAGCTAGTAGTAGCATTA---ATAGAGTTTAAATTATCAGCACATTCGATTAAAACACA 1638 Query 139823 TGAACTAAACTGCCGAGTTGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAAAT 139882 ||||||||||| ||||| ||||| || |||| |||||| || |||||||||||||| Sbjct 1639 AGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAAT 1698 Query 139883 CTGTCGAGTAGATACCGCTTCATAAAAACG 139912 | |||||| | || | ||||||||| Sbjct 1699 TTTAAAAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 203 bits (224), Expect = 4e-47 Identities = 316/449 (70%), Gaps = 2/449 (0%) Strand=Plus/Minus Query 139466 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139525 ||| || | ||| | ||||| |||| || | |||||| | | |||||||| | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 139526 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 139585 |||| ||||| ||||| | | |||||||||||| |||||||| || |||||| || Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 139586 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 139645 ||| ||||| || || | || || || || ||||| ||||| || || | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 139646 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATTTTAGAACCTTC 139705 ||| ||||||| ||| |||||||||| | |||| || | | ||| | ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 139706 AGCACGAATCATACCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139765 || ||||| || ||||||||||||||||||| |||| || | ||||| |||||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 139766 TGAAGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACGACGCATGA 139825 || | | | ||| || || || || ||| | ||||| | || || || Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 139826 ACTAAACTGCCGAGTTGGAGTAC-GACAGCCAGCCATAATAGGAGTTGGTAATGAAATCT 139884 |||||| || ||||| ||||| | ||| |||| |||||| || |||||||||||||| | Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGAC-TCCAGACATAATTGGTGTTGGTAATGAAATTT 3309 Query 139885 GTCGAGTAGATACCGCTTCATAAAAACGA 139913 |||||| | || | ||||||||| Sbjct 3308 TAAAAGTAGAAATAGCATTGTAAAAACGA 3280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540409838788800