Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq107321 163 4e-35 seq48246 159 5e-34 seq6274 149 9e-31 seq23164 131 2e-25 >seq107321 Length=2628 Score = 163 bits (180), Expect = 4e-35 Identities = 408/617 (66%), Gaps = 6/617 (1%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || || ||||| || | ||| || |||| || |||||||| || ||||| Sbjct 1297 AAGCACGCGAAGTCACAGTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTT 1238 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||| || || |||||||||||||| ||||| || |||| || || ||| Sbjct 1237 AGCCCTGGCATAAGCCCTCGTTTTTTGAGCCAGAATATGGCGCAGAAACTGCCGGAGAAG 1178 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC-GTTGTG 48316 || || ||||| ||| || || ||| | | | ||| || | || ||| | | Sbjct 1177 AAGATACCTTCGACGCAAGCGAAAGCGATGATCCGTTCTGCGAA---GGTTTCAGATCCA 1121 Query 48317 T--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | ||||| | | ||||| | ||| ||||||| | ||||| || || || || || Sbjct 1120 TCGATCCATCTGAGGGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCG 1061 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 ||| || | || || ||| ||||| | ||| | || | | ||||| ||| Sbjct 1060 CGAAACAGCCTACTCTTCTCGTTGGAGTCTTTGATGTATGATTCGAGAAGCAGACTGTAC 1001 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 || |||||||| || || || ||||| ||||| |||||||| || | ||| || | Sbjct 1000 ATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGCA 941 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | || ||||| | || ||| | || | || || ||| |||||||| || Sbjct 940 ACTTGGACCTCTTTCATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGAGGCG 881 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 || || ||||| | || || | || || || | ||| | || || | ||| Sbjct 880 GCGAAGAATGCGAGGACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGGTTGTCCCAC 821 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | | || | ||| | ||| || || || || ||||||||||| || ||||||||| Sbjct 820 TGACGCTGGTCCTGTGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTGCTTTT 761 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 || ||||| | ||| || | | ||||||||||||||| ||| ||||||| ||| ||| Sbjct 760 TTGTACATTTCCCAGATCTGAGGGTATTGGATTGGGAACATACAGAATCTATCTGGGTTT 701 Query 48735 TTTGCAAGGATAGGTTC 48751 ||||| | ||| || Sbjct 700 GGAGCAAGAAGAGGCTC 684 >seq48246 Length=4099 Score = 159 bits (176), Expect = 5e-34 Identities = 587/913 (64%), Gaps = 20/913 (2%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| ||||| || | ||||||||| ||||| || || || | || || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 |||||| ||||||| || || ||||| || | ||| | |||| ||| | | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 | ||||| ||||||||||| || ||| |||||| || | ||||| |||| ||| Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC---ACTAT 48085 | |||| || || | |||||| ||| || || ||||| || || Sbjct 1465 AGCACAAGGTAAGGCATCGCAGACGAACTCTCTTTCAATCTCCACCGCATCGGAGACGAT 1524 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGT---GGATACAACAAATGTTTAAACATTAAACA 48142 | | | || ||||||||| | | | || || | || || |||| Sbjct 1525 TCCCT---TGACTCGTTCCTCACTCAGCTTCGTCTTCAGTAACCCATAAAGCA---AACA 1578 Query 48143 TGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACC 48202 ||||||||||| || | || ||||||| ||||||||||| || || || | || Sbjct 1579 CGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCC 1638 Query 48203 GGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATAT 48262 ||||| | |||||||| || | |||||| || || ||| ||| |||||||| || Sbjct 1639 AGGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAAT 1698 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC--GTTGTGTATC 48320 ||||| ||| || || ||| ||| | |||| | || | || | | | ||| Sbjct 1699 CCCTTCAACGCAAGCGAAAGCGATAATACGCTCT--GCAAACGTCTCCGAGCCATCGATC 1756 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 || | ||||||| || ||||||| ||||| || || || || || || ||| Sbjct 1757 CATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAG 1816 Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCG 48440 || | |||| ||||| || || | ||| | || | | | ||| ||||| ||| Sbjct 1817 AGTCTGCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTACATCTCG 1876 Query 48441 GAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGT 48500 ||||| ||||| || || || ||||| |||||||| || | ||| || | | || Sbjct 1877 GAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGA 1936 Query 48501 ACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 ||||| | |||||| | || | || || || || ||||| || || || Sbjct 1937 ACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCGAAG 1996 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT--CAT 48618 || || | || || | ||||| | | ||| | |||| | ||||| | | Sbjct 1997 AAGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGACGT 2056 Query 48619 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTAT 48678 || ||||| || | ||| || ||||| ||||||||||| || || || ||||| || | Sbjct 2057 TG--ATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCTTGT 2114 Query 48679 ACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTG 48738 |||| | ||| || | | ||| || |||||||| ||| || | || ||| ||| | Sbjct 2115 ACATTTCCCAAATTTGAGGGTACTGAATTGGGAACATACAGAAGCGATCTGGGTTTGGAG 2174 Query 48739 CAAGGATAGGTTC 48751 |||| | ||| || Sbjct 2175 CAAGAAGAGGCTC 2187 >seq6274 Length=8207 Score = 149 bits (164), Expect = 9e-31 Identities = 208/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 78089 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGG 78148 ||| |||||||| | ||||||| |||||||||||| | ||| | || | | || Sbjct 4825 ATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACCCTT 4884 Query 78149 TCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGG 78208 || |||| |||||| || || | ||||| || |||| |||| | || | ||||||||| Sbjct 4885 TCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACATTGG 4944 Query 78209 AATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATT 78268 ||||||||| ||||||||||||||||| ||| || ||||||||| |||| | ||||| Sbjct 4945 AATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTGATATT 5004 Query 78269 ACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGT 78328 | | || | || || || ||||| || || | ||| || ||| || || Sbjct 5005 ATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTTAAAGT 5064 Query 78329 ATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||| ||||| || || || || ||||| ||||| | || ||||||||| Sbjct 5065 ATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 >seq23164 Length=5532 Score = 131 bits (144), Expect = 2e-25 Identities = 165/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||| | ||| || | |||| | || | ||||||||||| |||||| Sbjct 1869 ACCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACC 1810 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || |||||||||||||||||| || || |||||| |||| ||||||||| ||| || Sbjct 1809 ATTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGA 1750 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 | || |||||||||| | | || | | || | ||| || || ||||| || || | Sbjct 1749 CACTCCAATTCCTCCTG-CTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATA 1691 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || | || || |||||||| ||||| || | ||||||||| Sbjct 1690 TAGCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | || ||||||||||| || |||||| ||| || | || || Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||| | ||| | ||||| || || | ||||||||| || || || | ||| ||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 ||||| |||||||||||||| | | || || ||||| | || ||| |||| | | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| ||||||||||| | || |||||| | || || ||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAAT 1305 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 |||||||||| || ||||| |||||| || | |||||| |||| |||| ||||| Sbjct 2268 TTTCATATTGGGTGTATAGTTTTTCAAAATCTTGACCCCAACAATCAGCCAAACCAGGAG 2209 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 |||||||| || | || ||||| || |||| || |||| || |||||| |||| Sbjct 2208 CCTCATTTGGACAGAATAAAGACCAATCTCCATTACTCTGGACTCTTTCCATAAAAAGAT 2149 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||||| || ||| ||| | ||| |||| | |||||||| Sbjct 2148 CAGGTATCCAAAGTGCATAAAACAAATCCCGGGCCCGCTGTTCTTC 2103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 687061221470400