Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6274 170 3e-37 seq23164 136 6e-27 seq48246 129 8e-25 >seq6274 Length=8207 Score = 170 bits (188), Expect = 3e-37 Identities = 213/292 (73%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 76684 ATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGG 76743 ||| || ||||| | ||||||| |||||||||||| | ||| | || | ||||| Sbjct 4825 ATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACCCTT 4884 Query 76744 TCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG 76803 || |||| |||||| || || | ||||| ||||||| |||| | || | ||||||||| Sbjct 4885 TCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACATTGG 4944 Query 76804 AATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATT 76863 |||||| || |||||||| |||||||| ||| || ||||||||| ||| | ||||| Sbjct 4945 AATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTGATATT 5004 Query 76864 ACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGT 76923 | | ||| | || || || ||||| ||| ||| | |||||| ||| || || Sbjct 5005 ATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTTAAAGT 5064 Query 76924 GTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||| || || |||||||| ||||| | || ||||||||| Sbjct 5065 ATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||| |||||||||||||| | | || | || || Sbjct 5222 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATTAAATGA 5281 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| || || | || || || || |||||| || || || || | ||||| | Sbjct 5282 TATGTTTTGATTACAGAATCAATGTCTTCTTTATGAATCCCAACTGCAACTCTCATCAGC 5341 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 ||||| ||||| | ||| ||| || | ||| || || | || || |||| | Sbjct 5342 ATATGTTGAGGCCTTTCCACAACATTTCCTTCTATCTTTAAGAGATAAGACCTTTCAAGG 5401 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || |||||||| | || |||||| | || || ||||| Sbjct 5402 GTTTTGAATCCAAAATAATCATAGTCAAAGTCCCGATCATAGATAAT 5448 >seq23164 Length=5532 Score = 136 bits (150), Expect = 6e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||| | |||||| | |||| | || | ||||||||||| ||| || Sbjct 1869 ACCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACC 1810 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| || || |||||| ||||||||||||| |||||| Sbjct 1809 ATTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGA 1750 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||||||||| ||| || | |||||| || ||||||||||| || Sbjct 1749 CACTCCAATTCCTCCTGCTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATAT 1690 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 | || || || ||||| ||||| || | ||||||||| Sbjct 1689 AGCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | || ||||||||||| ||||||||| ||| || | || || Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| | ||||| | ||| ||||| | ||||||||| ||||| || | ||| ||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 ||||| ||||||| ||| ||| | | || || ||||| | || ||| |||| | | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| ||||||||||| | || |||||| | || || ||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAAT 1305 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 |||||||||| || |||| |||||| || | |||||| |||| ||||||||||| Sbjct 2268 TTTCATATTGGGTGTATAGTTTTTCAAAATCTTGACCCCAACAATCAGCCAAACCAGGAG 2209 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 ||||| ||||| | || ||||| || |||| || || | || |||||| |||| Sbjct 2208 CCTCATTTGGACAGAATAAAGACCAATCTCCATTACTCTGGACTCTTTCCATAAAAAGAT 2149 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 |||||||||| || ||| ||| | ||| |||| | ||||||| Sbjct 2148 CAGGTATCCAAAGTGCATAAAACAAATCCCGGGCCCGCTGTTCTTC 2103 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 ||||| | |||||| || || || ||||||||||||||||| |||||||| ||| || Sbjct 3069 ATAAAAGTATCTGCAAGACCTTGGACTCCAATACCAATAGGCCTATGTCTAAGATTTGAT 3010 Query 76148 ATTT---CAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 ||| ||| ||| || |||||||||||| | ||| |||||||| ||||| ||| Sbjct 3009 CTTTTTGCAGTTTC---AACAGGGTAATAATTTACATCAATAATTTTGTTGAGGTTT 2956 >seq48246 Length=4099 Score = 129 bits (142), Expect = 8e-25 Identities = 575/907 (63%), Gaps = 8/907 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || ||||| || | ||||||||| ||||| || || || | || || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||| |||||||||| || |||| || | ||| | |||| ||| | | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 | ||||| ||||||||||| || || |||||| || | ||||| |||| || Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 |||| || || | |||||| |||||| || ||||| || | || Sbjct 1465 AGCACAAGGTAAGGCATCGCAGACGAACTCTCTTTCAATCTCCACCGCATCGGAGACGAT 1524 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCA--AATGTTTAAACATTAAACATGCA 46635 | ||| ||||||||| | | ||| || |||| ||||| ||| Sbjct 1525 TCCCTTGACTCGTTCCTCACTCAGCTTCGTCTTCAGTAACCCATAAAGC--AAACACGCA 1582 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 |||||||| || | || ||||||| ||||||||||| || || || | |||||| Sbjct 1583 AAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCAGGC 1642 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || | ||||| || || | |||||| || || ||| ||| |||||||| || ||| Sbjct 1643 ATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAATCCCT 1702 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTT 46815 || || ||||| |||| || | |||| | | | | || ||||| | Sbjct 1703 TCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGTCTCCGAGCCATCGATCCATTTG 1762 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 ||||||||| || || |||| ||||| || || || || || || ||||| | Sbjct 1763 AGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGAGTCTG 1822 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 |||| |||| | || || | || | || | | | ||| ||||| || || || Sbjct 1823 CTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTACATCTCGGAGTGG 1882 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| |||||||| || | || || | || || |||||| Sbjct 1883 ATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGAACCTCT 1942 Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055 | |||||| | | | || || || || ||||| || || || || || Sbjct 1943 TTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCGAAGAAGGCA 2002 Query 47056 AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT--CATTGATAT 47113 | || || | ||||| | | || || |||| | ||||| | ||| || Sbjct 2003 AGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGACGTTG--AT 2060 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 ||| || | ||| || ||||| |||||||| || || || || ||||| || ||||| | Sbjct 2061 CTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCTTGTACATTT 2120 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTA 47233 ||| || | | | || || || || || ||| || | || ||| ||| ||||| | Sbjct 2121 CCCAAATTTGAGGGTACTGAATTGGGAACATACAGAAGCGATCTGGGTTTGGAGCAAGAA 2180 Query 47234 TAGGTTC 47240 ||| || Sbjct 2181 GAGGCTC 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705126788035200