Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq243076 89.7 7e-13 >seq243076 Length=1367 Score = 89.7 bits (98), Expect = 7e-13 Identities = 171/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 99519 AAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAAT 99578 |||| || ||||| || || || || |||||| | ||||| || | ||| | |||||| Sbjct 529 AAAGAAGATCGTACAGGTACAGGAACCTTGTCTATTTTTGGCTATAACATGAGATTTAAT 588 Query 99579 TTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCAT 99638 || ||||||||||||| | || || || ||||| | | |||||||||||| Sbjct 589 TTAAACAAAGGTTTTCCTCTTCTTACGACAAAAAAATGTCATATTCCATCTATTATTCAT 648 Query 99639 GAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTC 99698 ||| | | ||||| | ||||| ||||| |||| ||||| || | ||| | Sbjct 649 GAATTGTTATGGTTTTTAAAAGGAGATACTAATATTAGCTACCTTAATAAAAACAAAATA 708 Query 99699 ACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAG 99758 | || |||||| | |||| | | || |||| || | || || | || ||||| ||| Sbjct 709 TCAATTTGGAATAATTGGGCAGATGAATACGGAGATGTTGGTCCAATTTATGGAAAACAG 768 Query 99759 TGGCGGTCTTGG 99770 ||| || |||| Sbjct 769 TGGAGGAGTTGG 780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 726233876931600