Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq159469 210 2e-49 seq30067 181 1e-40 seq193075 82.4 8e-11 >seq159469 Length=1977 Score = 210 bits (232), Expect = 2e-49 Identities = 307/433 (71%), Gaps = 6/433 (1%) Strand=Plus/Minus Query 151956 ATGTTATCCGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTA 152015 || ||| ||||||||| | ||| | |||||| | |||||||| ||||| || |||| Sbjct 1736 ATATTAAGCGTTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTA 1677 Query 152016 TGGCTGGTTGTCGTACTCCTACTCGACAGTTCAGTTCATGCGTTGTTATTGAGGCAGGAG 152075 || |||| || ||||||||||| ||||| ||||| || ||| | || || | | Sbjct 1676 TGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTG 1617 Query 152076 ATTCGCTGAAGTCTATCAATAAGGCTTCTGCT---TCAATTGTTGAATATATCTCCAAAC 152132 || | || ||||| ||| ||| || || || |||||| ||||| | || ||| Sbjct 1616 ATAATTTAAACTCTAT---TAATGCTACTACTAGCTCTATTGTTAAATATGTATCACAAC 1560 Query 152133 GAGCTGGAATCGGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGG 152192 | ||||||||||| ||||| | || ||||| || ||| | ||| | | | Sbjct 1559 GTGCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACG 1500 Query 152193 GTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAAT 152252 |||||| | ||||||||| ||| ||||||| ||||| ||||| | ||| || |||| Sbjct 1499 GTGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAAT 1440 Query 152253 CATGCTCACAGGGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATT 152312 | || ||||| || ||| | | || || ||||| ||| || |||||| || ||||||| Sbjct 1439 CCTGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATT 1380 Query 152313 TGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCC 152372 | |||||||||| | | | ||||| |||||||| | ||| | |||||||| | | | Sbjct 1379 TTGAAGTTGAAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGC 1320 Query 152373 GTCATATGGATTA 152385 ||||||| ||||| Sbjct 1319 GTCATATTGATTA 1307 >seq30067 Length=5021 Score = 181 bits (200), Expect = 1e-40 Identities = 296/424 (70%), Gaps = 2/424 (0%) Strand=Plus/Plus Query 151964 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 152023 |||||||| | || | |||||| | |||||||| ||||| || |||||| |||| Sbjct 3281 CGTTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGA 3340 Query 152024 TGTC-GTACTCCTACTCGACAGTTCAGTTCATGCGTTGTTATTGAGGCAGGAGATTCGCT 152082 ||| | ||||||||||| || || ||||| || ||| | ||||| | ||| | Sbjct 3341 -GTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTT 3399 Query 152083 GAAGTCTATCAATAAGGCTTCTGCTTCAATTGTTGAATATATCTCCAAACGAGCTGGAAT 152142 || || || ||| | | || || |||||| ||||| | ||| |||| |||||||| Sbjct 3400 AAATTCCATTAATGCGACAACTAGCTCTATTGTTAAATATGTTTCCCAACGTGCTGGAAT 3459 Query 152143 CGGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACG 152202 || ||||| | || ||||| || ||| | ||| | | || |||| | Sbjct 3460 TGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATT 3519 Query 152203 CCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGCTCACA 152262 ||||||||| ||| ||||||| ||||||||||| | ||||| ||||| || || || Sbjct 3520 TCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCA 3579 Query 152263 GGGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGA 152322 || || || | || || ||||| ||| || |||||| || |||||||| |||||||| Sbjct 3580 AGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 3639 Query 152323 AAATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCCGTCATATGGA 152382 |||| | | ||||| ||||| |||| || | |||||||| | | |||||| | || Sbjct 3640 AAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGA 3699 Query 152383 TTAT 152386 ||| Sbjct 3700 CTAT 3703 >seq193075 Length=1689 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 1124 TTTGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CC 1182 ||| |||||| | | |||| |||| | ||||||||| ||||||| ||||||||||| || Sbjct 185 TTTTAGCGGACAGCGGGAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 244 Query 1183 ATTATACGATATCCGCA 1199 |||||||||| |||||| Sbjct 245 ATTATACGATGTCCGCA 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540352869588000