Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq227744 80.6 7e-11 >seq227744 Length=1455 Score = 80.6 bits (88), Expect = 7e-11 Identities = 179/266 (67%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 26927 ATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACCG 26986 ||||| || ||||| || |||| || | ||||| |||||| | ||| | | Sbjct 412 ATTTCTGTAGTGTAACGTTCAAGTCCATTTTGATCTTGCCATTTTCTAGTTTGTAACGAT 353 Query 26987 CCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTTG 27046 |||||||| | || | ||||| || || ||||| ||||| ||||| || | || Sbjct 352 CCTTCAATATATACTTGAGAACCTTTTCGAAGATATTCGCCAGCAATTTCTGCTAATTTT 293 Query 27047 CCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTATCT 27106 || || | || | || |||||||| || | ||||| ||| || ||| |||||| Sbjct 292 CCAAATAAAACTATTCGATGCCATTCTGTTTTTTCTTTATTTTCCCCAGTGTTTTTATCT 233 Query 27107 TTCCACTTTTCGGTTGTGGC-AATGCTGAGATTGGCAACTGCGCCACCTGACGGCATGTA 27165 ||||| ||||| | || || |||| | | ||| | ||||| ||| ||||| || Sbjct 232 TTCCAATTTTCTGAAGTAGCTAATG-TCATATTTACTACTGCATTACCATTTGGCATATA 174 Query 27166 GCGCACTTCTGGATCGTTGCCTAAAT 27191 || ||||| ||||| | ||||||| Sbjct 173 ACGAACTTCAGGATCTTGCCCTAAAT 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132621723501600