Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq30067 161 1e-34 seq159469 156 5e-33 >seq30067 Length=5021 Score = 161 bits (178), Expect = 1e-34 Identities = 307/451 (68%), Gaps = 6/451 (1%) Strand=Plus/Plus Query 43362 TTTCTACAACGCAATTTCGGATCGTAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGT 43421 ||| ||||| || ||||| | ||| | || ||||| || || |||||| |||| || Sbjct 3283 TTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGT 3342 Query 43422 GCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGG 43481 | |||||||| ||||| ||| ||| || | ||||||| | |||| | Sbjct 3343 CAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAA 3402 Query 43482 TTCTCTGAATGCTGTAAC---CTCTGCGATCGTGAAGTATATTTCACAACGCGCGGGTAT 43538 ||| | ||||| ||| |||| || || || ||| |||| ||||| || || || Sbjct 3403 TTCCATTAATGCGACAACTAGCTCT---ATTGTTAAATATGTTTCCCAACGTGCTGGAAT 3459 Query 43539 CGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGT 43598 ||| ||||||| ||||| ||||||||| | || | || | || |||||| | Sbjct 3460 TGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATT 3519 Query 43599 ACATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACAGCGGTTAAATCCTGTTCACA 43658 ||||| || || || || | |||||| |||| | || || ||||| ||||| || Sbjct 3520 TCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCA 3579 Query 43659 AGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTATCCGATCTGGCATTTGGAAGTTGA 43718 ||| || ||| | ||||| |||||||| | | |||||| || |||||||| |||||||| Sbjct 3580 AGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 3639 Query 43719 AAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAGAATAACCGTATTCGTCACCTGGA 43778 ||| | | ||| | |||||||||| || |||| | || | | ||||| | || Sbjct 3640 AAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGA 3699 Query 43779 TTATGGCGTTCAGCTTAACGATTTGATGTAT 43809 |||| |||| |||| | || |||||| Sbjct 3700 CTATGCAATTCAAATTAATAAATTCATGTAT 3730 >seq159469 Length=1977 Score = 156 bits (172), Expect = 5e-33 Identities = 306/451 (68%), Gaps = 6/451 (1%) Strand=Plus/Minus Query 43362 TTTCTACAACGCAATTTCGGATCGTAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGT 43421 ||| || || |||||||| | ||| | || ||||| || || |||||| |||| || Sbjct 1726 TTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGAGT 1667 Query 43422 GCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGG 43481 || |||||||| ||||||||| ||| || | || |||| | |||| | Sbjct 1666 ACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTAAA 1607 Query 43482 TTCTCTGAATGCTGTAAC---CTCTGCGATCGTGAAGTATATTTCACAACGCGCGGGTAT 43538 ||| | |||||| || |||| || || || ||| | |||||||| || || || Sbjct 1606 CTCTATTAATGCTACTACTAGCTCT---ATTGTTAAATATGTATCACAACGTGCTGGAAT 1550 Query 43539 CGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGT 43598 |||| ||||||| ||||| |||||||| | || | || | ||||||||| | Sbjct 1549 CGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACGGTGAAGCATT 1490 Query 43599 ACATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACAGCGGTTAAATCCTGTTCACA 43658 ||||| || || || || | ||||| |||| | || || |||||||||||||| Sbjct 1489 TCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCCTGTTCACA 1430 Query 43659 AGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTATCCGATCTGGCATTTGGAAGTTGA 43718 ||| || || | || || |||||||| | | |||||| || |||||||| |||||||| Sbjct 1429 AGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 1370 Query 43719 AAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAGAATAACCGTATTCGTCACCTGGA 43778 || | | ||| | ||||| || | ||| |||| | || | | ||||| | || Sbjct 1369 AAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGCGTCATATTGA 1310 Query 43779 TTATGGCGTTCAGCTTAACGATTTGATGTAT 43809 ||| | |||| |||| | || |||||| Sbjct 1309 TTACGCACTTCAAATTAATAAATTAATGTAT 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570258535052400