Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031065.1 Length=159878 Score E Sequences producing significant alignments: (Bits) Value seq30067 239 5e-58 seq159469 215 5e-51 >seq30067 Length=5021 Score = 239 bits (264), Expect = 5e-58 Identities = 326/455 (72%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 132573 CATCAAATCATTGATTTGCAGACCATAATCTAGATGACGAATACGGTTTTCATCTACACC 132632 ||| || | ||| ||||| | |||| || | |||||| | | ||||| || | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 132633 TTTGTTGTTCTTTAATACAAGCAGGTTTTCAACTTCTAGATGCCACATTGGATAATAAAG 132692 ||||||| ||||| || | | ||||||||||| | |||||| ||||||||| ||| Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 132693 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 132752 ||| || || ||||| | ||||| |||||||||||||||||||| || | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 132753 TTTCCAAAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 132812 ||| ||||||| || |||||||| | |||| || || | ||| ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 132813 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAAT 132872 || ||||| || || || || || || ||||| || | | | ||| |||| ||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 132873 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAAGA 132932 | | || ||| ||||||||| ||||| | ||| || ||| || | |||||||| Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 132933 ACTAAATTGACGAGTAGGAGTACGAGCCCCCGCCATAATTGGTGTAGGTAATGAAATCTG 132992 ||||||||||||||||||||| | | || | |||||||||||| ||||||||||| | Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTT 3308 Query 132993 TCGAGTAGATACAGCATCATAAAAGCGAATAATAT 133027 |||||| | ||||| ||||| ||| ||||| Sbjct 3307 AAAAGTAGAAATAGCATTGTAAAAACGATGAATAT 3273 >seq159469 Length=1977 Score = 215 bits (238), Expect = 5e-51 Identities = 324/457 (71%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 132573 CATCAAATCATTGATTTGCAGACCATAATCTAGATGACGAATACGGTTTTCATCTACACC 132632 ||| || | ||| ||||| || | ||||| | |||||| | | ||||| || | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 132633 TTTGTTGTTCTTTAATACAAGCAGGTTTTCAACTTCTAGATGCCACATTGGATAATAAAG 132692 | | || || ||||| || | | |||||||||| | |||||| ||||||||| ||| Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 132693 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 132752 ||| || || || || | || |||||||| ||||| |||||||| ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 132753 TTTCCAAAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 132812 ||| ||||||| || |||||||| | |||| || || | ||| ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 132813 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATA--TACTTAATA 132870 || ||||| || || || || || || ||||| || ||| ||||| || |||| | Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACG-TTG-TGATACATATTTAACA 1579 Query 132871 ATACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAA 132930 ||| | || | | ||||||||||| || | ||| || |||||| | |||||| Sbjct 1580 ATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAA 1639 Query 132931 GAACTAAATTGACGAGTAGGAGTACGAGCCCCCGCCATAATTGGTGTAGGTAATGAAATC 132990 |||||||| |||||||||||||| || | || | |||||| ||||| ||||||||||| Sbjct 1640 GAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATT 1699 Query 132991 TGTCGAGTAGATACAGCATCATAAAAGCGAATAATAT 133027 | |||||| | |||| |||||| || |||||| Sbjct 1700 TTAAAAGTAGAAATTGCATTATAAAAACGCTTAATAT 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505880173192800