Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq159469 190 2e-43 seq30067 185 9e-42 >seq159469 Length=1977 Score = 190 bits (210), Expect = 2e-43 Identities = 312/445 (70%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 141252 TTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTG 141311 |||||||| |||| | ||||| | |||||| | | ||||| || | ||| | || Sbjct 1289 TTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTA 1348 Query 141312 TTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCC 141371 || || | || | | |||||||||| || ||||| |||||||| | | || || Sbjct 1349 TTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 1408 Query 141372 GCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAG 141431 || || || | ||||| ||||| || |||||||| || || |||| |||||||| | Sbjct 1409 GCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAA 1468 Query 141432 AAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAAC--CCTCG-GCG 141488 ||||| ||| |||||||| |||||||| || ||| | || ||| ||| Sbjct 1469 AAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATA---GGACTTCCTAACGCG 1525 Query 141489 CGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATG--TATTTCGTAATTG 141546 ||||| || ||||||||||| || || ||||| | |||| ||||| ||| | Sbjct 1526 CGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTG--TGATACATATTTAACAATAG 1583 Query 141547 ATGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAAC 141606 | || || | ||||| || || | | ||||| ||| ||| || | || || |||| Sbjct 1584 AGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAAC 1643 Query 141607 TGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTTTT 141666 | ||||| || || ||||| || || ||||||||||| |||||||| |||||||| || Sbjct 1644 TAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAA 1703 Query 141667 TAGTAGAAACTGCATCATAGAAACG 141691 |||||||| ||||| ||| ||||| Sbjct 1704 AAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 185 bits (204), Expect = 9e-42 Identities = 309/444 (70%), Gaps = 6/444 (1%) Strand=Plus/Minus Query 141252 TTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTG 141311 |||||||| |||| |||| || | |||||| | | ||||| || | || ||||| Sbjct 3720 TTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTG 3661 Query 141312 TTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCC 141371 || || | || | | ||||||||||| || ||||| |||||||| | | || || Sbjct 3660 TTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 3601 Query 141372 GCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAG 141431 || ||||| | || || ||||| || || ||||| || || |||| || ||||| | Sbjct 3600 GCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAA 3541 Query 141432 AAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAAC--CCTCG-GCG 141488 ||||| ||| |||||||| |||| ||| || ||| | || ||| ||| Sbjct 3540 AAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATA---GGACTTCCTAATGCG 3484 Query 141489 CGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAATTGAT 141548 ||||| ||||||||||||||||| || ||||| | | ||||| ||| || Sbjct 3483 CGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAG 3424 Query 141549 GCAGCAGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACTG 141608 || | | ||||| ||||| | | ||||| ||| |||||| | || || ||||| Sbjct 3423 CTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTA 3364 Query 141609 AACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTTTTTA 141668 || || || || ||||| | || |||||||||||||||||||| |||||||| || | Sbjct 3363 AATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAA 3304 Query 141669 GTAGAAACTGCATCATAGAAACGA 141692 ||||||| |||| || |||||| Sbjct 3303 GTAGAAATAGCATTGTAAAAACGA 3280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532446810499200