Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq30067 185 9e-42 >seq30067 Length=5021 Score = 185 bits (204), Expect = 9e-42 Identities = 312/449 (69%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 61688 ATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTA 61747 ||||| ||||||||| |||| |||||||| | || ||||||| || || ||||||| Sbjct 3273 ATATTCATCGTTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTA 3332 Query 61748 TGGCAGGTGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTG 61807 || | || | | ||||| ||||| || || | |||||| | |||||| | || Sbjct 3333 TGTCTGGAGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTG 3392 Query 61808 ATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATATATTTCTAAAC 61864 || ||||| || ||||| | |||| ||| || ||| || ||||| |||| ||| Sbjct 3393 ATAATTTAAATTCCATTAATGCGACAACT--AGC-TCTATTGTTAAATATGTTTCCCAAC 3449 Query 61865 GAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGG 61924 | ||||| || ||||| || | || |||| ||| ||| | || | | | Sbjct 3450 GTGCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACG 3509 Query 61925 GCGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAAT 61984 | |||| ||||| ||| ||| || || | |||||||| |||| || ||||||| Sbjct 3510 GAGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAAT 3569 Query 61985 CTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACT 62044 ||||||||||||| ||| || | ||||| ||||| || | |||||| || ||||| | Sbjct 3570 CTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATT 3629 Query 62045 TAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTC 62104 | ||||| || || |||||||| | ||||| |||| || | || ||||| | | | Sbjct 3630 TTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTAC 3689 Query 62105 GACATATGGACTACGGAATTCAGATTAAT 62133 | ||| | ||||| | |||||| |||||| Sbjct 3690 GTCATGTCGACTATGCAATTCAAATTAAT 3718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536716335603600