Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq30067 196 5e-45 seq159469 190 2e-43 >seq30067 Length=5021 Score = 196 bits (216), Expect = 5e-45 Identities = 308/441 (70%), Gaps = 0/441 (0%) Strand=Plus/Plus Query 136354 TCGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGG 136413 |||||| || |||| |||||||| || |||||||| |||||||||||||||||||| Sbjct 3280 TCGTTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGG 3339 Query 136414 TGTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCT 136473 || | ||||| || || || || ||||| || || | |||||| ||| ||||| | | Sbjct 3340 AGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTT 3399 Query 136474 TAATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTGCTGGTAT 136533 ||||| ||||| | | || || ||| ||||| || | |||||||| || Sbjct 3400 AAATTCCATTAATGCGACAACTAGCTCTATTGTTAAATATGTTTCCCAACGTGCTGGAAT 3459 Query 136534 TGGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCAA 136593 |||||||||||| || ||||| ||| |||| ||| || ||| |||| Sbjct 3460 TGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATT 3519 Query 136594 GCATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCCA 136653 ||||||||| ||| ||||| | ||||| || |||| ||| || || || || || || Sbjct 3520 TCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCA 3579 Query 136654 AGGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTGA 136713 ||| || || | ||||| || || || | | |||||| || ||||| || |||||||| Sbjct 3580 AGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 3639 Query 136714 AAACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAGA 136773 ||| | | || | || ||||||| || | || ||||| | | || ||| | || Sbjct 3640 AAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGA 3699 Query 136774 TTATGGTGTTCAGATTAATAA 136794 |||| |||| |||||||| Sbjct 3700 CTATGCAATTCAAATTAATAA 3720 >seq159469 Length=1977 Score = 190 bits (210), Expect = 2e-43 Identities = 306/440 (70%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 136355 CGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGGT 136414 ||||| ||| ||||| |||||||| || |||||||| |||||||| ||||||||||| Sbjct 1728 CGTTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGA 1669 Query 136415 GTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCTT 136474 || || ||||| || || ||||| ||||| || || | || ||| ||| ||||| | | Sbjct 1668 GTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTA 1609 Query 136475 AATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTGCTGGTATT 136534 || || ||||| | | || || ||| ||||| | | |||||||| || Sbjct 1608 AACTCTATTAATGCTACTACTAGCTCTATTGTTAAATATGTATCACAACGTGCTGGAATC 1549 Query 136535 GGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCAAG 136594 |||||||||||||| ||||| || |||| ||| || |||||||| Sbjct 1548 GGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACGGTGAAGCATTT 1489 Query 136595 CATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCCAA 136654 ||||||||| ||| ||||| | |||||||| |||| || || || || || || ||| Sbjct 1488 CATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCCTGTTCACAA 1429 Query 136655 GGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTGAA 136714 |||||||| | || || || || || | | |||||| || ||||| || ||||||||| Sbjct 1428 GGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGAA 1369 Query 136715 AACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAGAT 136774 | | | || | || || || | ||| | || ||||| | | || ||| | ||| Sbjct 1368 AGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGCGTCATATTGAT 1309 Query 136775 TATGGTGTTCAGATTAATAA 136794 || | |||| |||||||| Sbjct 1308 TACGCACTTCAAATTAATAA 1289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533984978920800