Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq219143 430 8e-116 seq211929 398 5e-106 seq342690 107 1e-18 seq227744 105 4e-18 seq408088 87.8 1e-12 >seq219143 Length=1507 Score = 430 bits (476), Expect = 8e-116 Identities = 886/1310 (68%), Gaps = 16/1310 (1%) Strand=Plus/Minus Query 96691 AGCACCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCC 96750 || ||| |||||||| ||||| | || | || || ||||||| | | || || || Sbjct 1462 AGGACCTGCATAGTTGTCAAATCTAGACCAGTGTCCATTAAAAGTTAGACATACTGTTCC 1403 Query 96751 AATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATC 96810 |||||| ||||||| ||| ||||| || |||| || ||||| || || | || |||| Sbjct 1402 AATTGGACCATTTCTTTGTTTTCCTATTATTATTTCTGCAATTCCTTTAAAATCACTATT 1343 Query 96811 CGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGC 96870 ||||||| ||| || || || | |||||| || | || || || || || | | Sbjct 1342 TTCATGATAAATTTCATCTCGGTATATAAACATTATTAAATCAGCATCTTGTTCTAAAGA 1283 Query 96871 TCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCG 96930 |||||||||||||||||||||||||| |||| || || | | ||||| | || || Sbjct 1282 ACCTGATTCACGTAAATCTGAATTTACTGGTCTCTTATCAGATCTTTGTTCTAAAGAACG 1223 Query 96931 ATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGA 96990 |||||||||||| ||||| | ||| || ||||| | ||| || || || || || | | Sbjct 1222 ATTAAGTTGTGATAATGCTATCACTGGAACTTGAAGTTCTTTTGCTAATGCTTTTAAAGT 1163 Query 96991 GCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAG 97050 | ||| || || |||||||| || |||| ||| || | | || || | ||| | Sbjct 1162 TCTAGATATTTCTGCAATTTCAAGAGTTCTGTTTTCAGATAAAGCAGGTACTCTCATTAA 1103 Query 97051 TTGCAGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGC 97110 ||| || || |||| |||||| | | || ||| ||| || |||| |||||| || Sbjct 1102 TTGAAGATAATCGACCATAATTAAAGTTAATCCATTATTCTCACGGTAAATACGACGTGC 1043 Query 97111 GCGGGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTT 97170 | ||||||| || | || || | || || ||||||||| ||||||||| || Sbjct 1042 TCTTGAACGTACTTCACTAGGAGTTAATGCTGAAGAATCATCAATATAAATATTCTTTTT 983 Query 97171 GTCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCC 97230 | | |||||| |||| ||||| | ||||||||||| || || || | ||| || Sbjct 982 TTTGAGGAGAATATTGATTGTACCAGACATGCGCGCCCAATCTTCATCATTTAATTGTCC 923 Query 97231 TGTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTG 97290 || ||||| || | |||| ||| | | | ||||| | |||||||| | || Sbjct 922 AGTCCGAATTCGTGCTTGATTAACTCTAGATAATGAAGCTAACATACGCATCATAATTTG 863 Query 97291 GTGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATT 97350 | | ||||| || | ||||||| | ||| || ||||| | | || ||||| Sbjct 862 TTCTCCAGGCATTTCTAAACTAAAAATGAGTACCGGTTTATCATATAACATAGCAGCATT 803 Query 97351 TTCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGAT 97410 ||| | |||||||||||| || || || |||||||| || || || || | ||| || Sbjct 802 TTCACATAAATTCATCGCAAATGTTGTTTTTCCCATAGAAGGTCGTGCTGCAATAATAAT 743 Query 97411 GAGATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCAAG 97470 || || || ||| | |||| ||| || ||||| | ||| | |||| |||| || Sbjct 742 AAGTTCAGAACGCTGTAAACCTGACGTTTTTTTATTTAAATCTTGATATCCAGTATTAAT 683 Query 97471 TCCCGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATC 97530 ||| ||||| |||||||| ||| ||| |||| ||| |||| || || ||| |||| Sbjct 682 TCCTGTTACTCCATCATGAGGTGATAAAAATAACTTTTCAATGCTAGCAACAGTTTCATC 623 Query 97531 GAGAA--TGCTGGCGATATCTTTTGGACCACTACCGCTCTTTTGT----CGTTTTTCAGC 97584 |||| |||| | |||| ||| || || | |||||| | |||||||| || Sbjct 622 AAGAATTTGCT--CAATATTTTTAGGTCCTGAA----TCTTTTTTAAAACGTTTTTCTGC 569 Query 97585 TATTTCAAAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTG 97644 |||| ||| || | ||| || ||| | | ||| | || || || | Sbjct 568 AATTTTAAAGACACTTGATTCTGCATAATCTAATAGTTCTTCACTTTTTCGACCTTGTGT 509 Query 97645 CGCATATCCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCG 97704 |||||||||| | ||||||| ||| || || | |||||||| | || | || || Sbjct 508 ATCATATCCAGCATTGGCTATTTTATTAGCTACCAATATCATTTCTCTTACTATTGCACG 449 Query 97705 TTCACGAACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACAT 97764 ||| ||||| ||||| ||||| ||| ||||||||| | || || ||||| ||||| | Sbjct 448 TTCTCGAACTATATCAGCATATGCAGTAATATTTGCTGTACTAGGAGTGTTTTTTGATAG 389 Query 97765 CTCCGCAAGGTACGCAAAACCACCGGCGCGTTCTAATTTACCGTTCTGTTCAAGTGCTTC 97824 || || | || | ||| | || | | ||||||||| || || ||||| | | || Sbjct 388 TTCTGCCAAATAAGAAAATCTGCCTACACTTTCTAATTTGCCTTTTTGTTCTAAAGACTC 329 Query 97825 AGCAAGTGTTATCAAATCAATCGGTTTGCCATGACTTAATAACCT-CTCCATCTCACTGA 97883 || | || || ||||| || || | || || | | || || | ||| || ||| Sbjct 328 AGACAAAGTGATTAAATCGATTGGATACCCTAGA-TCGAGAAGCTGTTGCATTTC-TTGA 271 Query 97884 AA-ATTTCACGATGAGCATTGGTATAAAAATCATCAGCAACTATACGATCTGCCACTTCA 97942 || ||| |||||||| || || |||||||||||||||||| | | |||| || | Sbjct 270 AATATTAAACGATGAGGTTTACTAAAAAAATCATCAGCAACTACATGCTCTGAAACCGTA 211 Query 97943 TCCCAGCGGCAGTTATCAAGCATTAAGCCACCAAGTACAGCTTGTTCTGC 97992 ||||| | ||||| | |||||| ||||| | ||| | ||| ||||| Sbjct 210 TCCCATTGTTCATTATCTAACATTAAACCACCTAATACTGATTGCTCTGC 161 >seq211929 Length=1554 Score = 398 bits (440), Expect = 5e-106 Identities = 872/1302 (67%), Gaps = 6/1302 (0%) Strand=Plus/Plus Query 96694 ACCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAAT 96753 ||||| |||||||||||| | || | || || ||||||| || | || || ||||| Sbjct 51 ACCAGAATAGTTATCAAATCTAGACCAATGTCCATTAAAAGTTAAACAGACTGTTCCAAT 110 Query 96754 TGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGG 96813 ||| ||||||| ||||||||| || || | || || || ||||| | || |||| Sbjct 111 TGGTCCATTTCTTTGCTTTCCTATTATAATTTCTGCTATTCCCTTAAGATCACTATTTTC 170 Query 96814 GTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCC 96873 | ||||| ||| || || || | |||||| || | || || || || || | | ||| Sbjct 171 ATTATAAATTTCATCACGGTATATAAACATTATTAAATCAGCATCTTGTTCTAAAGATCC 230 Query 96874 TGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATT 96933 |||||||||||||||||||||||| |||| ||| || | | || || | |||||||| Sbjct 231 TGATTCACGTAAATCTGAATTTACTGGTCTTTTATCAGATCTTTGCTCTAAAGATCGATT 290 Query 96934 AAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCG 96993 ||||||||| | ||| | || || ||||||||||| || || || || || | | | Sbjct 291 AAGTTGTGATAGTGCTATTACTGGAACTTGTAATTCTTTTGCTAATGCTTTTAACGTTCT 350 Query 96994 AGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTG 97053 ||| || || |||||||| || || || || || || || || | ||| ||||| Sbjct 351 AGATATTTCTGCAATTTCAAGAGTACGATTTTCAGATAGAGAAGGCACTCTCATTAGTTG 410 Query 97054 CAGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCG 97113 || || || | |||||| | | || ||| |||||| ||||| |||||| || | Sbjct 411 CAAATAATCAACCATAATTAAAGTTAATCCATTATTTTCACGATAAATACGACGCGCTCT 470 Query 97114 GGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTC 97173 ||||| | || | || || | || ||| ||||| || | ||||||| || | Sbjct 471 TGAACGGACTTCACTAGGGGTTAATGCTGATGAATCATCGATGTAGATATTCTTTTTTTT 530 Query 97174 CAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGT 97233 | || || || | |||||| | || |||||||| || || || | ||| || || Sbjct 531 AAGAAGGATGTTAATAGTGCCAGATATACGTGCCCAATCTTCATCATTTAATTGTCCAGT 590 Query 97234 TCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGTG 97293 |||||| || | |||| ||| | | | ||| |||| ||||||||| | || | Sbjct 591 TCGAATTCGTGCTTGATTAACTCTAGACAAAGATGCCAACATGCGCATCATAATTTGTTC 650 Query 97294 GCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTTC 97353 | ||||| || | ||||| | ||||| || || || | | | | || |||||||| Sbjct 651 TCCAGGCATTTCTAAACTAAATATTAATACAGGTTTTTCATAAAGCATAGCAGCATTTTC 710 Query 97354 GACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGAG 97413 | |||||| ||||| || || || ||||| || || | || || | ||| || || Sbjct 711 ACACAAATTCATTGCAAATGTCGTTTTTCCCATTGAAGGTCTTGCTGCAATAATAATCAG 770 Query 97414 ATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCAAGTCC 97473 || || ||| | |||| ||||| ||||| | || | |||| || | || ||| Sbjct 771 TTCAGAGCGCTGTAATCCTGATGTCTTTTTATTTAAGTCTTGATATCCTGTGTTAATTCC 830 Query 97474 CGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATCGAG 97533 ||||||||||| || || |||||| | ||| || | | || ||| |||| || Sbjct 831 TGTTACACCATCGTGAGGAGATAAAAACAATTTTTCAATACTCGCAACAGTTTCATCAAG 890 Query 97534 AATGCTGGCGATATCTTTTGGACCACTACCGCTCTTTT--GTCGTTTTTCAGCTATTTCA 97591 ||| | | || |||||| | || || |||| |||||||| || |||| | Sbjct 891 AATTTGTTCAACATTTTTTGGTC--CTGAGTCTTTTTTAAACCGTTTTTCTGCAATTTTA 948 Query 97592 AAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCATAT 97651 || || | ||| || ||| | ||||| | ||| | ||| | ||||| Sbjct 949 AATACACTTGATTCTGCATAATCTAATAATTCTTCGCTCTTTCTGCCTTGTGTATCATAT 1008 Query 97652 CCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCACGA 97711 || || | |||||||| || || || | ||||| || | || | || ||||| || Sbjct 1009 CCGGCATTAGCTATTTTGTTAGCTACTAATATCATCTCTCTTACTATTGCACGTTCTCGT 1068 Query 97712 ACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCCGCA 97771 || ||||| ||||| ||| |||||||| | ||| || || || ||||| | || || Sbjct 1069 ACTATATCAGCATATGCAGTGATATTTGCGGTGCTAGGGGTATTTTTTGATAATTCAGCT 1128 Query 97772 AGGTACGCAAAACCACCGGCGCGTTCTAATTTACCGTTCTGTTCAAGTGCTTCAGCAAGT 97831 | ||| | ||| | |||| | | ||||||||| || || ||||| | | || | || Sbjct 1129 AAGTAAGAAAATCTACCGACACTTTCTAATTTTCCTTTTTGTTCTAAAGACTCGGATAGA 1188 Query 97832 GTTATCAAATCAATCGGTTTGCCATGACTTAATAA-CCTCTCCATCTCACTGAAAATTTC 97890 || |||| ||| || || | || || | || || | | ||| || || ||| Sbjct 1189 GTAATCAGATCTATTGGATATCCTAGA-TCAAGAAGTTTTTGCATTTCTTCAAATATTAA 1247 Query 97891 ACGATGAGCATTGGTATAAAAATCATCAGCAACTATACGATCTGCCACTTCATCCCAGCG 97950 ||||||| ||| || |||||||||||||||||| | | |||| || |||||| | Sbjct 1248 GCGATGAGGTTTGCTAAAAAAATCATCAGCAACTACATGTTCTGAAACACTATCCCACTG 1307 Query 97951 GCAGTTATCAAGCATTAAGCCACCAAGTACAGCTTGTTCTGC 97992 ||||| | |||||| ||||| | ||| | |||||||| Sbjct 1308 TTCATTATCTAACATTAATCCACCTAATACTGACTGTTCTGC 1349 >seq342690 Length=956 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 44714 CATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTACACCGGC 44773 ||||||||| || || || | || | |||||| || || |||||||||| ||| Sbjct 591 CATTTGCATAGTCCCACCAATATTTACAACAATTTCTGTAGTATAACGTTCTAAACCATT 650 Query 44774 GTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTCG 44833 | ||| ||| || | |||| ||| ||||| || || || |||||||||||||| Sbjct 651 TTGGTCTTGCCATTTTCTAGTTTGTAGTGATCCTTCAATATATACTTGAGAACCTTTTCG 710 Query 44834 TAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTGT 44893 | ||| |||| |||||||| || | |||||| || || || | | ||||||||||||| Sbjct 711 AAGATATTCACCGGCAATTTCTGCTAATTTTCCAAATAATACTATTCTATGCCATTCTGT 770 Query 44894 TTGCTCTTT 44902 || ||||| Sbjct 771 TTTTTCTTT 779 >seq227744 Length=1455 Score = 105 bits (116), Expect = 4e-18 Identities = 220/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 44714 CATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTACACCGGC 44773 ||||||||| || || || | || |||||||| || ||||||||||| | || Sbjct 443 CATTTGCATTGTACCACCAATATTTACAATAATTTCTGTAGTGTAACGTTCAAGTCCATT 384 Query 44774 GTCATCTGTCCACTTACGGGTTT-TAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTC 44832 | |||| ||| || | |||| ||| ||| ||| || || || ||||||||||||| Sbjct 383 TTGATCTTGCCATTTTCTAGTTTGTAACGATCC-TTCAATATATACTTGAGAACCTTTTC 325 Query 44833 GTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTG 44892 | | ||| || | |||||||| || | |||||| || ||||| | | ||||||||||| Sbjct 324 GAAGATATTCGCCAGCAATTTCTGCTAATTTTCCAAATAAAACTATTCGATGCCATTCTG 265 Query 44893 TTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTTGCGATGCTGA 44952 ||| ||||| | || || || | || || ||| ||| || || | | | Sbjct 264 TTTTTTCTTTATTTTCCCCAGTGTTTTTATCTTTCCAATTTTCTGAAGTAGCTAATGTCA 205 Query 44953 GTCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGCCCCAGGGTAC 45012 || | || || |||||||| ||||| | | || || |||||||| | | Sbjct 204 TATTTACTACTGCATTACCATTTGGCATATAACGAACTTCAGGATCTTGCCCTAAATGCC 145 Query 45013 CAATCAGGATGACTTTGTTTACACC 45037 |||| || || ||||| |||||||| Sbjct 144 CAATAAGAATAACTTTATTTACACC 120 >seq408088 Length=780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 98316 TGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACC 98375 || |||||| | | ||| ||||||| | |||| |||||||||||||||| ||||| ||| Sbjct 696 TGATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACC 637 Query 98376 ACTGAGCTAAAGGGCC 98391 |||||||||||||||| Sbjct 636 ACTGAGCTAAAGGGCC 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327365993804260