Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq57017 84.2 2e-11 >seq57017 Length=3783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAA--CGGAACCCA 111157 ||||| || || ||||||| | |||||||| |||||||| |||| | || ||| Sbjct 1286 ATGCAGATCTTCATCAAAACCCTCACCGGCAAGACCATTACGTTGGAGGTCCAGAGTCCA 1227 Query 111158 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111217 | || | | | | | || || || ||| |||||| ||||| |||| |||| Sbjct 1226 G--ATACCATCGACAAAGTCAAGGCCAAGATTCACGACAAGGAAGGTATTCCTCCTGATC 1169 Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277 | ||||||||||||| || || || || |||||||| ||||| || | || || | Sbjct 1168 AGCAAAGGCTTATTTTCGCCGGAAAGCAGTTGGAAGAAGGCAAAACCCTGTCGGACTACA 1109 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| ||||| ||||| || | || | || | ||||| || ||||| Sbjct 1108 ATATTCAAAAGGAATCCACTGTTCACCTCGTCCTTCGTCTCCGAGGTGG 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417307272685360