Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq342690 122 3e-23 seq227744 116 1e-21 >seq342690 Length=956 Score = 122 bits (134), Expect = 3e-23 Identities = 207/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 36480 ACAATCTCTGTGGTGTATCTGTCTATTCCGTTGCTGTCAGTCCATTTACGAGTACGAAGC 36539 ||||| ||||| || || | |||| || || ||| |||||| | ||| | || Sbjct 619 ACAATTTCTGTAGTATAACGTTCTAAACCATTTTGGTCTTGCCATTTTCTAGTTTGTAGT 678 Query 36540 TGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGT 36599 ||||| || || || || |||||||||||||| ||||| || |||| ||| || | | Sbjct 679 GATCCTTCAATATATACTTGAGAACCTTTTCGAAGATATTCACCGGCAATTTCTGCTAAT 738 Query 36600 TTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTA 36659 || || |||| || || | |||||| ||||| | |||||| |||||||| || | ||| Sbjct 739 TTTCCAAATAATACTATTCTATGCCATTCTGTTTTTTCTTTATTTTCTCCAGTATTTTTA 798 Query 36660 TCTTTCCACTGCTCAGATGTTGCAACGGAAATGTTGACAATTGCAGAACCTGATGCTGAA 36719 |||||||| | || || ||||| | | || || || | |||| ||| || | | Sbjct 799 TCTTTCCAATTTTCTGAAGTTGCTAAAGTCATATTTACTACTGCATTACC--ATTGGGCA 856 Query 36720 TAT--TTAACTTCAGGGTCGTTTCCGAGAGTTCCGACAATAATTACTTTATTTACGCC 36775 ||| ||||| || || | ||| | | ||| | || ||| |||||||| ||||| Sbjct 857 TATAACGTACTTCTGGATCTTGTCCTAAATGTCCAATAAGAATAACTTTATTAACGCC 914 >seq227744 Length=1455 Score = 116 bits (128), Expect = 1e-21 Identities = 202/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 36482 AATCTCTGTGGTGTATCTGTCTATTCCGTTGCTGTCAGTCCATTTACGAGTACGAAGCTG 36541 ||| ||||| ||||| | || | ||| || || |||||| | ||| | | | Sbjct 413 AATTTCTGTAGTGTAACGTTCAAGTCCATTTTGATCTTGCCATTTTCTAGTTTGTAACGA 354 Query 36542 GCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTT 36601 ||||| || || || || |||||||||||||| ||||| || |||| ||| || | ||| Sbjct 353 TCCTTCAATATATACTTGAGAACCTTTTCGAAGATATTCGCCAGCAATTTCTGCTAATTT 294 Query 36602 CCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTATC 36661 || |||| || || |||||||| ||||| | |||||| ||||| || || | ||||| Sbjct 293 TCCAAATAAAACTATTCGATGCCATTCTGTTTTTTCTTTATTTTCCCCAGTGTTTTTATC 234 Query 36662 TTTCCACTGCTCAGATGTTGCAACGGAAATGTTGACAATTGCAGAACCTGATGCTGAATA 36721 |||||| | || || || || | | || || || | |||| ||| || ||| Sbjct 233 TTTCCAATTTTCTGAAGTAGCTAATGTCATATTTACTACTGCATTACCATTTGGCATATA 174 Query 36722 TTTAACTTCAGGGTCGTTTCCGAGAGTTCCGACAATAATTACTTTATTTACGCC 36775 ||||||||| || | || | | || | || ||| ||||||||||| || Sbjct 173 ACGAACTTCAGGATCTTGCCCTAAATGCCCAATAAGAATAACTTTATTTACACC 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150500955853320