Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031928.1 Length=169936 Score E Sequences producing significant alignments: (Bits) Value seq30067 192 6e-44 seq159469 170 2e-37 >seq30067 Length=5021 Score = 192 bits (212), Expect = 6e-44 Identities = 308/440 (70%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 143383 TGGATTCCATAGTCCATATGACGAATACGGTTCTCATCGACACCCTTGTTGTTTTTCAGA 143442 || ||| ||||||| | |||||| | | || || || | ||| |||||||||| | | Sbjct 3711 TGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAA 3652 Query 143443 ACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 143502 || | | |||||||||||| |||||||| || |||||| || ||| ||||| || || Sbjct 3651 ACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCT 3592 Query 143503 CGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATA 143562 | | || ||||| ||||| ||||| ||||| | || |||||||| | || || ||| Sbjct 3591 CTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATA 3532 Query 143563 ACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATCATACCA 143622 ||| ||||| |||| || | | |||| || ||| || ||||| || Sbjct 3531 CAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATTTGTCCT 3472 Query 143623 ACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCAGTTTTG 143682 | || |||||||| || ||||||| |||| |||| || || ||| ||| || Sbjct 3471 GCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTTGTCGCA 3412 Query 143683 TTAATAG-ATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGACGGGT 143741 ||||| | |||| | | | || | |||||| | |||||||||||||||||||| || Sbjct 3411 TTAATGGAATTTAAATTA-TCAGCACATTCAATTAAAACACAAGAACTAAATTGACGAGT 3353 Query 143742 TGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGAAACCTGACGGGTACTTACAGC 143801 || || | |||||| |||||| || ||||||||||||| | | ||| | ||| Sbjct 3352 AGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAAATAGC 3293 Query 143802 ATCATAAAAACGAATAATAT 143821 || ||||||||| ||||| Sbjct 3292 ATTGTAAAAACGATGAATAT 3273 >seq159469 Length=1977 Score = 170 bits (188), Expect = 2e-37 Identities = 298/431 (69%), Gaps = 2/431 (0%) Strand=Plus/Plus Query 143392 TAGTCCATATGACGAATACGGTTCTCATCGACACCCTTGTTGTTTTTCAGAACGAGCAGA 143451 || || |||||||| | | || || || | || | || ||||| | ||| | | | Sbjct 1307 TAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 1366 Query 143452 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCA 143511 |||||||||| |||||||| || |||||| || ||| ||||| || || | | ||| Sbjct 1367 CTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCG 1426 Query 143512 CCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGGTA 143571 ||||||||||| ||||| || ||| | || || ||||| | || || ||| ||| ||| Sbjct 1427 CCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTA 1486 Query 143572 TGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGATA 143631 || |||| || | | |||| || ||| || ||||| || | || ||| Sbjct 1487 TGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATA 1546 Query 143632 CCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCAGTTTTGTTAATAGA- 143690 || || || ||||||| || | |||| || || ||| ||| ||| |||||||| Sbjct 1547 CCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAGAG 1606 Query 143691 TTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGACGGGTTGGTGTACG 143750 ||| | | | || | ||| || | |||||||||||||| ||||| || || || || Sbjct 1607 TTTAAATTA-TCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCG 1665 Query 143751 TGCTCCAGCCATAATAGGAGTTGGTAATGAAACCTGACGGGTACTTACAGCATCATAAAA 143810 | |||||| |||||| || ||||||||||||| | | ||| | |||| |||||| Sbjct 1666 TACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAAA 1725 Query 143811 ACGAATAATAT 143821 ||| |||||| Sbjct 1726 ACGCTTAATAT 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537713296617600