Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031934.1 Length=168929 Score E Sequences producing significant alignments: (Bits) Value seq30067 179 4e-40 seq159469 167 2e-36 >seq30067 Length=5021 Score = 179 bits (198), Expect = 4e-40 Identities = 303/439 (69%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 142464 TGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCGACACCCTTGTTGTTTTTCAGA 142523 || ||| | ||||| | |||||| | | || || || | ||| |||||||||| | | Sbjct 3711 TGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAA 3652 Query 142524 ACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 142583 || | | |||||||||||| |||||||| || |||||| || ||| ||||| || || Sbjct 3651 ACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCT 3592 Query 142584 CGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATA 142643 | | || ||||| ||||| ||||| ||||| | || |||||||| | || || ||| Sbjct 3591 CTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATA 3532 Query 142644 ACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATCATACCA 142703 ||| ||||| |||| || | | |||| || ||| || ||||| || Sbjct 3531 CAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATTTGTCCT 3472 Query 142704 ACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCAGTTTTG 142763 | || |||||||| || ||||||| |||| |||| || || ||| ||| || Sbjct 3471 GCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTTGTCGCA 3412 Query 142764 TTAATAGATTTCAGCGAGTCGCCGGCTTCAATAACCACACAAGAACTAAATTGACGGGTT 142823 ||||| || || | || | |||||| | |||||||||||||||||||| || Sbjct 3411 TTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTGACGAGTA 3352 Query 142824 GGTGTACGTGCTCCAGCCATAATAGGAGTAGGCAATGAAACCTGACGAGTACTTACAGCA 142883 || || | |||||| |||||| || || || ||||||| | | |||| | |||| Sbjct 3351 GGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAAATAGCA 3292 Query 142884 TCATAAAAACGAATAATAT 142902 | ||||||||| ||||| Sbjct 3291 TTGTAAAAACGATGAATAT 3273 >seq159469 Length=1977 Score = 167 bits (184), Expect = 2e-36 Identities = 296/432 (69%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 142471 CGTAGTCCATATGACGAATACGGTTCTCATCGACACCCTTGTTGTTTTTCAGAACGAGCA 142530 |||| || |||||||| | | || || || | || | || ||||| | ||| | | Sbjct 1305 CGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATA 1364 Query 142531 GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTC 142590 | |||||||||| |||||||| || |||||| || ||| ||||| || || | | || Sbjct 1365 AACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTC 1424 Query 142591 CACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGG 142650 | ||||||||||| ||||| || ||| | || || ||||| | || || ||| ||| | Sbjct 1425 CGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAG 1484 Query 142651 TATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGA 142710 |||| |||| || | | |||| || ||| || ||||| || | || | Sbjct 1485 TATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAA 1544 Query 142711 TACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCAGTTTTGTTAATAG 142770 |||| || || ||||||| || | |||| || || ||| ||| ||| ||||||| Sbjct 1545 TACCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAG 1604 Query 142771 ATTTCAGCGAGTCGCCGGCTTCAATAACCACACAAGAACTAAATTGACGGGTTGGTGTAC 142830 | || | || | ||| || | |||||||||||||| ||||| || || || | Sbjct 1605 AGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTC 1664 Query 142831 GTGCTCCAGCCATAATAGGAGTAGGCAATGAAACCTGACGAGTACTTACAGCATCATAAA 142890 || |||||| |||||| || || || ||||||| | | |||| | |||| ||||| Sbjct 1665 GTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAA 1724 Query 142891 AACGAATAATAT 142902 |||| |||||| Sbjct 1725 AACGCTTAATAT 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534526186328400