Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq227744 138 3e-28 seq342690 120 8e-23 >seq227744 Length=1455 Score = 138 bits (152), Expect = 3e-28 Identities = 237/343 (69%), Gaps = 1/343 (0%) Strand=Plus/Minus Query 26640 ACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCCTG 26699 ||| | ||||||||| || ||||||| || || | ||| |||||| | || || | Sbjct 449 ACCTAACATTTGCATTGTACCACCAATATTTACAATAATTTCTGTAGTGTAACGTTCAAG 390 Query 26700 TCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAACC 26759 || ||||||| ||||||||||| || | || ||||||| ||| || | |||||| Sbjct 389 TCCATTTTGATCTTGCCATTTTCTAGTTTGTAACGATCCTTCAATATATACTTGAGAACC 330 Query 26760 TTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGCCA 26819 |||||| ||||| |||| ||||||||||| | ||| || | || | || ||||| Sbjct 329 TTTTCGAAGATATTCGCCAGCAATTTCTGCTAATTTTCCAAATAAAACTATTCGATGCCA 270 Query 26820 CTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAAC 26879 || || | || || | || ||||| | ||||| ||| | |||||| ||||| | Sbjct 269 TTCTGTTTTTTCTTTATTTTCCCCAGTGTTTTTATCTTTCCAATTTTCTGAAGTAGCTAA 210 Query 26880 TGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCCAA 26939 ||| | ||| | | || | || | | || ||| | | ||| ||||| ||||| | Sbjct 209 TGTCATATTTACTACTG-CATTACCATTTGGCATATAACGAACTTCAGGATCTTGCCCTA 151 Query 26940 GGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 26982 | ||||||| || || |||||||| ||||| || ||||| Sbjct 150 AATGCCCAATAAGAATAACTTTATTTACACCTCTACTGGCCAT 108 >seq342690 Length=956 Score = 120 bits (132), Expect = 8e-23 Identities = 233/343 (68%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 26640 ACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCCTG 26699 ||| | ||||||||| || ||||||| || | | ||| ||||| | || || Sbjct 585 ACCTAACATTTGCATAGTCCCACCAATATTTACAACAATTTCTGTAGTATAACGTTCTAA 644 Query 26700 TCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAACC 26759 | |||| || ||||||||||| || | | | ||||||| ||| || | |||||| Sbjct 645 ACCATTTTGGTCTTGCCATTTTCTAGTTTGTAGTGATCCTTCAATATATACTTGAGAACC 704 Query 26760 TTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGCCA 26819 |||||| ||||| || | |||||||||||| | ||| || | ||| | | ||||| Sbjct 705 TTTTCGAAGATATTCACCGGCAATTTCTGCTAATTTTCCAAATAATACTATTCTATGCCA 764 Query 26820 CTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAAC 26879 || || | || || | |||||||| | ||||| ||| | |||||| || || | Sbjct 765 TTCTGTTTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAA 824 Query 26880 TGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCCAA 26939 || | ||| | | || | || | |||| ||| | | ||||||||| || || | Sbjct 825 AGTCATATTTACTACTG-CATTACCATTGGGCATATAACGTACTTCTGGATCTTGTCCTA 883 Query 26940 GGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 26982 | ||||||| || || ||||| |||||||| |||||||| Sbjct 884 AATGTCCAATAAGAATAACTTTATTAACGCCTCTACTTGCCAT 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127950829467100