Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq48246 120 3e-22 >seq48246 Length=4099 Score = 120 bits (132), Expect = 3e-22 Identities = 304/459 (66%), Gaps = 5/459 (1%) Strand=Plus/Plus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| ||||||||||| |||| || ||||| | || ||||| || || || ||| Sbjct 1574 AAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTT 1633 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAA 23624 ||||| ||||| || || ||||| || | |||||| || || ||| || ||||||||| Sbjct 1634 AATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCGC-GCAGAAGCTTCCGGAAAA 1692 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684 |||||| || ||||| || || || | || ||| |||| || | | | Sbjct 1693 GAAAATCCCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGT---CTCCGAGCC 1749 Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGC 23744 | |||||||| | |||||| || ||| | |||||| ||| || || ||||| Sbjct 1750 ATCGATCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGC 1809 Query 23745 TTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATA 23804 | ||||| |||| || | | || |||| || | || | || ||||| || Sbjct 1810 TCGGAAGAGTCTGCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTA 1869 Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864 ||| || || || ||||| || || |||||||| || || || || | || || | Sbjct 1870 CATCTCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGC 1929 Query 23865 CAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGC 23924 | |||||| || || | |||| | |||| ||||| ||| || ||||| || Sbjct 1930 AACTTGAACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGC 1989 Query 23925 AGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 23963 || ||||| ||||| || | | ||||| || || || Sbjct 1990 GGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGCCTCTC 2028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515776989354000