Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq230622 89.7 5e-13 >seq230622 Length=445 Score = 89.7 bits (98), Expect = 5e-13 Identities = 195/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||||||||| || ||||| || || || ||||| || ||||||||||| ||| || || Sbjct 4 ACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGC 63 Query 16552 CTCCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGT 16610 || | | ||| ||||| | | ||| ||| | || || ||||| || || || | Sbjct 64 TTCAGAGACTTGAACTTCTTTCATGAAA-CGTCCAGCAAGATTCTCCAAAACAATGCCAT 122 Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC-AGATGTAAGA 16669 || ||||||||| || || | | ||| | ||||| | || ||||| || |||| Sbjct 123 CAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAGG 182 Query 16670 ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729 | | ||||| | ||| | || | ||| ||||| || | ||||| ||| ||| Sbjct 183 A-CTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGCT 241 Query 16730 ACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | ||||| || ||||| | |||||| | | ||| || || ||||| Sbjct 242 TCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAA 288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509463916619840