Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq230622 89.7 5e-13
>seq230622
Length=445
Score = 89.7 bits (98), Expect = 5e-13
Identities = 195/287 (68%), Gaps = 4/287 (1%)
Strand=Plus/Plus
Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551
||||||||| || ||||| || || || ||||| || ||||||||||| ||| || ||
Sbjct 4 ACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGC 63
Query 16552 CTCCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGT 16610
|| | | ||| ||||| | | ||| ||| | || || ||||| || || || |
Sbjct 64 TTCAGAGACTTGAACTTCTTTCATGAAA-CGTCCAGCAAGATTCTCCAAAACAATGCCAT 122
Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC-AGATGTAAGA 16669
|| ||||||||| || || | | ||| | ||||| | || ||||| || ||||
Sbjct 123 CAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAGG 182
Query 16670 ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729
| | ||||| | ||| | || | ||| ||||| || | ||||| ||| |||
Sbjct 183 A-CTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGCT 241
Query 16730 ACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776
| ||||| || ||||| | |||||| | | ||| || || |||||
Sbjct 242 TCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAA 288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 509463916619840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |