Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq273947 181 1e-40 seq230622 93.3 5e-14 >seq273947 Length=700 Score = 181 bits (200), Expect = 1e-40 Identities = 410/606 (68%), Gaps = 14/606 (2%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 ||||| ||||| || || | |||||| || ||||| || || |||| ||||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| |||| ||||||| ||||||||||||| | | | || || | || | Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 |||||||| || ||||| || || ||| |||||| || | ||||||||| | || Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 ||| || | || || | ||||| || ||| || || || || | ||| Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361 Query 24084 GATCTTACT-GTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 24142 | ||| | |||| ||||| || | | || | | ||| |||||| || || Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 |||||| || ||||||||||||| ||| || || || || || |||||||| ||||| Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTT 24261 || ||||| ||||| | ||| || ||||| ||| | | | || || ||||| ||||||| Sbjct 241 TAATCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAGCTACCTGAGAAGAAGATTCCTT 183 Query 24262 CTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGCGCTGTCATGTATCCAC 24317 | || ||||| || | || | || || ||| | | |||||| |||||| Sbjct 182 CAACACAAGCAAATGCCAAAATACGCTCGGCA-AACGATTCCGTGCTGTC---GATCCAC 127 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 ||| |||||||| |||||||| || ||||| || | ||||| || ||| ||| | | Sbjct 126 TTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-A 68 Query 24378 TAG-tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 24436 | | | || || || |||||| | ||| || || | | |||||| ||||| || || Sbjct 67 TCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGA 8 Query 24437 ATGAAT 24442 || || Sbjct 7 GTGGAT 2 >seq230622 Length=445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 195/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 24419 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 24478 |||||| ||||| || || || || ||||||||||| ||||||||||| || || ||| Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60 Query 24479 AGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 24538 || || | | || |||||| | || ||| | || | ||| || || || || Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120 Query 24539 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 24598 ||| || ||||| || || | || || | || || | || ||||| || |||| Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180 Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 | ||||| | ||| | || | ||| ||||| || | ||||| || || || Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240 Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || ||||| || ||||| | ||| || | | | || ||||||||||| || Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591457205189760