Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq279770 109 5e-19 seq21568 102 7e-17 seq126021 95.1 1e-14 seq280556 91.5 1e-13 seq44495 91.5 1e-13 seq281289 84.2 2e-11 >seq279770 Length=767 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | || |||||||| || ||| ||| |||| | || Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||| ||| |||||||| || | || || ||| Sbjct 242 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 301 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || ||||| || || | ||| | |||||||||||| Sbjct 302 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 361 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || |||||||||||||| || || ||||| | || | || || ||| Sbjct 362 ATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGGG 409 >seq21568 Length=652 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | || |||||||| ||||| ||||| || ||| ||| | Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| ||| ||| || ||||| || | || || || Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGATTCAAGACAAAGAGGGAATCCCACCTGACCA 419 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| ||||| |||||||||||| || |||| | || |||||||| Sbjct 418 GCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACAA 359 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || |||||||| ||||| || ||||| | ||| | || || ||| Sbjct 358 CATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGACTGCGTGGTGGG 310 >seq126021 Length=250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| ||||||| | ||||| || || ||||| ||| ||| | | Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | || || ||| || || |||||| | ||| ||||| Sbjct 76 TGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCA 135 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||| | |||||||| ||||| || || |||||| || | |||| ||||||||| Sbjct 136 GCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTA--GCCGATTAC 193 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || ||||| ||||| || ||||||||| | ||| Sbjct 194 AACATTCAAAAGGAGTCCACTCTTCACCTTGTG 226 >seq280556 Length=777 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||| |||||||| | || || || || || ||| ||||| Sbjct 668 GATAAAGAAGGGATCCCACCAGACCAACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAA 609 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || ||| | |||||||| || ||||| |||||||| || |||||| ||||| | Sbjct 608 GATGGCAGGACTTTAGCCGATTATAACATTCAAAAGGAATCGACACTTCACTTGGTGCTG 549 Query 29175 CGATTACGAGGAGGG 29189 || | || |||||| Sbjct 548 CGTCTTCGTGGAGGG 534 >seq44495 Length=1402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| || |||||||| ||| ||| ||| || | Sbjct 1374 ATGCAAATTTTCGTAAAGACCCTGACAGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1315 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| ||| || || || || ||| | ||| ||| || Sbjct 1314 GATACCATCGATAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1255 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||||||||| || || || ||||| || ||| || | |||||||| || Sbjct 1254 CAAAGACTTATCTTCGCCGGGAAGCAACTAGAGGATGGTCGTACCCTTGCCGATTATAAC 1195 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| || ||||||||| | ||||| || Sbjct 1194 ATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCG 1160 >seq281289 Length=787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| | || || |||||||| ||| || |||| | | Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || || |||||||| || | ||| || || Sbjct 613 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCA 672 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || ||||| || || || || |||||||| |||||| | ||| |||| || ||||| Sbjct 673 GCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAA 732 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||||||| || | || ||||| Sbjct 733 TATTCAGAAGGAATCAACATTGCATTTGGTG 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426743210096360