Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq279770 109 5e-19
seq21568 102 7e-17
seq126021 95.1 1e-14
seq280556 91.5 1e-13
seq44495 91.5 1e-13
seq281289 84.2 2e-11
>seq279770
Length=767
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | ||||| | || |||||||| || ||| ||| |||| | ||
Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || | ||| ||| ||| |||||||| || | || || |||
Sbjct 242 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 301
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || ||||||||||| || || ||||| || || | ||| | ||||||||||||
Sbjct 302 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 361
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
|| |||||||||||||| || || ||||| | || | || || |||
Sbjct 362 ATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGGG 409
>seq21568
Length=652
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || ||| | || |||||||| ||||| ||||| || ||| ||| |
Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | || | ||| ||| ||| || ||||| || | || || ||
Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGATTCAAGACAAAGAGGGAATCCCACCTGACCA 419
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|| || || |||||||| ||||| |||||||||||| || |||| | || ||||||||
Sbjct 418 GCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACAA 359
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
|| || |||||||| ||||| || ||||| | ||| | || || |||
Sbjct 358 CATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGACTGCGTGGTGGG 310
>seq126021
Length=250
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
||||||||| ||| ||||||| | ||||| || || ||||| ||| ||| | |
Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | || | || || ||| || || |||||| | ||| |||||
Sbjct 76 TGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCA 135
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138
||||| | |||||||| ||||| || || |||||| || | |||| |||||||||
Sbjct 136 GCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTA--GCCGATTAC 193
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTG 29171
|| ||||| ||||| || ||||||||| | |||
Sbjct 194 AACATTCAAAAGGAGTCCACTCTTCACCTTGTG 226
>seq280556
Length=777
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||||||||| | || ||| |||||||| | || || || || || ||| |||||
Sbjct 668 GATAAAGAAGGGATCCCACCAGACCAACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAA 609
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| || ||| | |||||||| || ||||| |||||||| || |||||| ||||| |
Sbjct 608 GATGGCAGGACTTTAGCCGATTATAACATTCAAAAGGAATCGACACTTCACTTGGTGCTG 549
Query 29175 CGATTACGAGGAGGG 29189
|| | || ||||||
Sbjct 548 CGTCTTCGTGGAGGG 534
>seq44495
Length=1402
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | || || |||| || |||||||| ||| ||| ||| || |
Sbjct 1374 ATGCAAATTTTCGTAAAGACCCTGACAGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1315
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | ||||| ||| || || || || ||| | ||| ||| ||
Sbjct 1314 GATACCATCGATAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1255
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||||||||||| || || || ||||| || ||| || | |||||||| ||
Sbjct 1254 CAAAGACTTATCTTCGCCGGGAAGCAACTAGAGGATGGTCGTACCCTTGCCGATTATAAC 1195
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176
|| |||||||| || ||||||||| | ||||| ||
Sbjct 1194 ATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCG 1160
>seq281289
Length=787
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
||||||||| ||| | ||||| | || || |||||||| ||| || |||| | |
Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | || | ||| || || |||||||| || | ||| || ||
Sbjct 613 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCA 672
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|| ||||| || || || || |||||||| |||||| | ||| |||| || |||||
Sbjct 673 GCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAA 732
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171
||||||||||||||| || | || |||||
Sbjct 733 TATTCAGAAGGAATCAACATTGCATTTGGTG 763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426743210096360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |