Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq21568 102 7e-17 seq280556 100 2e-16 seq279770 100 2e-16 seq126021 100 2e-16 >seq21568 Length=652 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | || |||||||| ||||| ||||| || ||| ||| | Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || | ||| ||| ||| || ||||| || | || || || Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGATTCAAGACAAAGAGGGAATCCCACCTGACCA 419 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || |||||||| ||||| ||| |||||||| || |||| | || |||||||| Sbjct 418 GCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACAA 359 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || ||||||||||| ||||| || ||||| | ||| | || || ||| Sbjct 358 CATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGACTGCGTGGTGGG 310 >seq280556 Length=777 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || ||| |||||||| | || || || || || ||||||||| Sbjct 668 GATAAAGAAGGGATCCCACCAGACCAACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAA 609 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| | |||||||| || |||||||||||||| || |||||| ||||| | Sbjct 608 GATGGCAGGACTTTAGCCGATTATAACATTCAAAAGGAATCGACACTTCACTTGGTGCTG 549 Query 25248 CGATTACGAGGAGGG 25262 || | || |||||| Sbjct 548 CGTCTTCGTGGAGGG 534 >seq279770 Length=767 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || |||||||| || ||| ||| |||| | || Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| |||||||| || | || || ||| Sbjct 242 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 301 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || || ||| | || || | ||| | |||||||||||| Sbjct 302 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 361 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || || ||||||||||| || || ||||| | || | || || ||| Sbjct 362 ATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGGG 409 >seq126021 Length=250 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| ||||||| | ||||| || || ||||| ||| ||| | | Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || |||| || ||| || || |||||| | ||| ||||| Sbjct 76 TGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCA 135 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 ||||| | |||||||| ||||| || | |||||| || | |||| ||||||||| Sbjct 136 GCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTA--GCCGATTAC 193 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 || ||||||||||| || ||||||||| | ||| Sbjct 194 AACATTCAAAAGGAGTCCACTCTTCACCTTGTG 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409269230532368