Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq44495 140 3e-28 seq281664 131 2e-25 seq48980 127 2e-24 seq279770 113 5e-20 seq273947 107 2e-18 seq281289 105 7e-18 seq126021 102 8e-17 seq21568 93.3 4e-14 >seq44495 Length=1402 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || || |||||||||||| |||| || ||| || | Sbjct 1374 ATGCAAATTTTCGTAAAGACCCTGACAGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1315 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| ||| || | ||||| ||||| || ||| | ||||| Sbjct 1314 GATACCATCGATAACGTT-AAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 1256 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| |||| ||| || || || || || || | || ||||| ||| || || Sbjct 1255 GCAAAGACTTATCTTCGCCGGGAAGCAACTAGAGGATGGTCGTACCCTTGCCGATTATAA 1196 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || || |||||||| Sbjct 1195 CATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCG 1160 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||| ||||||||| | || || || | Sbjct 1146 ATGCAGATTTTCGTCAAGACGTTGACCGGCAAGACCATCACCTTAGAGGTTGAGAGTTCG 1087 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| ||||| | ||||| Sbjct 1086 GACACCATTGACAACG-TCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCA 1028 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| || || |||||||| || | | || | ||||| || Sbjct 1027 GCAGAGGCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGTAGGACTTTGGCTGACTATAA 968 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || ||||| | ||| | || | ||||| || Sbjct 967 CATCCAGAAGGAGTCAACCCTGCACTTGGTGCTTCGTCTCAGGGGTGG 920 >seq281664 Length=792 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || || ||||||||| | || || || | | Sbjct 776 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 717 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| || || |||||| | ||||| Sbjct 716 GACACAATTGACAACG-TGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCA 658 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||||||| ||| || |||||| |||| |||| || || || |||||||| Sbjct 657 ACAGAGACTCATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAA 598 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || ||||| || ||||| Sbjct 597 CATCCAGAAGGAGTCTACTCTCCATCTTGTCTTGCG 562 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| |||| ||||| | | Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| |||||||| ||||| || ||||||||| | ||||| Sbjct 488 GATACCATCGACAACG-TGAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 430 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| || || || |||||||| || | | || || |||||||| Sbjct 429 GCAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 370 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | || || || || || | || ||||||| || Sbjct 369 CATTCAGAAGGAGTCAACCCTTCACCTTGTCCTTCGTCTGAGGGGAGG 322 >seq48980 Length=3483 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| |||||||| || || || ||||| || |||| ||||| Sbjct 821 AATATGCAGATCTTCGTGAAAACGCTTACCGGGAAGACCATAACTCTCGAGGTCGAGAGT 880 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||||| ||| |||| || || ||||| || || ||||| Sbjct 881 TCTGATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAGGGAATACCGCCGGAC 940 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||| | ||| || || ||| |||| || | || || || ||||||| Sbjct 941 CAGCAGCGTCTCATTTTCGCCGGTAAGCAGATGGAGGATGGTCGAACACTTGCCGACTAC 1000 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 ||||||||||||||| ||||||| ||||| || || Sbjct 1001 AACATCCAGAAGGAGTCCACGCTCCATCTTGTCTT 1035 >seq279770 Length=767 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| ||||| |||||||| |||||| |||| || ||| | | Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||| |||| || ||||||||||| || | ||||| Sbjct 242 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 301 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || || || || |||| || || || ||| ||||| Sbjct 302 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 361 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| | || || ||| | ||| Sbjct 362 ATCCAGAAGGAATCTACACTCCATTTGGTG 391 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || || || ||||||||||| || | || || ||| | Sbjct 410 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 469 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| ||||| | ||||| ||||| ||||| | || || Sbjct 470 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAA 529 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| || | || || || ||||| || |||| || || ||| ||||||||| Sbjct 530 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTCGCCGACTACAAT 589 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 || |||||||| | || |||||| Sbjct 590 ATTCAGAAGGAATCTACCCTGCAT 613 >seq273947 Length=700 Score = 107 bits (118), Expect = 2e-18 Identities = 269/406 (66%), Gaps = 7/406 (2%) Strand=Plus/Plus Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 || ||||||||| | || || ||||| ||||||| || |||||| | ||||||| | Sbjct 77 GCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGCGTTAAAGTGGATCGAC 136 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 ||| || | || | |||||| | |||| || || || || || ||||| Sbjct 137 AGCACGGAATCG---TTTGCCGAGCGTATTTTGGCATTTGCTTGTGTTGAAGGAATCTTC 193 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 || || || || ||| | |||| || ||| | || ||||| || | ||||| || || Sbjct 194 TTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTGAAAAAACGTGGATTAATGCCTGGACTC 253 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || ||| || ||| | || || | ||||||||||| |||||||| ||||| |||||| Sbjct 254 ACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCATTGCGATTTTGCTTGTTTG 313 Query 117194 CTGTTCAAGCAT--TTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCG 117251 ||| | ||| ||| | || || ||| | | || || | ||||| || |||| Sbjct 314 TTGT--ATTCATTGTTGAGGAAGAAACTGAGTGAGAATCGAGTGAATGAGATTGTTACCG 371 Query 117252 ACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGAC 117311 | || || | || ||| | ||| | || || |||| || ||| | ||| Sbjct 372 AAGCCGTAGATATAGAGAGGGAATTCGTGTGTGATGCCTTGCCTGTTGCTCTAGTTGGAA 431 Query 117312 TCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAG 117357 | ||| |||| |||| |||||||| || || || ||||| || Sbjct 432 TGAATGGCGATTTGATGAGCCAATACATTGAATTTGTGGCCGATAG 477 >seq281289 Length=787 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || |||||||||||| | || || ||| | | Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | | |||| || || | || |||||||| |||||| | ||||| Sbjct 613 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCA 672 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| || | ||| || ||||| || || || | ||||| | |||||||| Sbjct 673 GCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAA 732 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||||||| | || ||||| | ||| Sbjct 733 TATTCAGAAGGAATCAACATTGCATTTGGTG 763 >seq126021 Length=250 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| |||||||||||||| || || || || | || || ||| | | Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || |||| ||||| || || || ||| |||| || Sbjct 76 TGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCA 135 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | | |||| || ||||| ||||| || || | || || || ||| ||||| Sbjct 136 GCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACAA 195 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| || |||||| |||| || || || ||| Sbjct 196 CATTCAAAAGGAGTCCACTCTTCACCTTGTG 226 >seq21568 Length=652 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || ||||| |||||||| | || || ||| | Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | ||| ||| |||| ||||||||||| ||||| | ||||| Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGATTCAAGACAAAGAGGGAATCCCACCTGACCA 419 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| || ||||| || | | || || || ||||| Sbjct 418 GCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACAA 359 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| ||||| | || |||||| | ||| Sbjct 358 CATCCAAAAGGAATCAACTCTGCATTTGGTG 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513254205493120