Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq281289 154 2e-32
seq279770 149 9e-31
seq280556 132 7e-26
seq21568 91.5 2e-13
seq122851 87.8 3e-12
>seq281289
Length=787
Score = 154 bits (170), Expect = 2e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || || || || |||||||| ||||| | ||| | ||| |
Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| | || |||||||| |||||||| || || || || || ||
Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAG 445
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||||||||||||||| ||||| || | |||||| ||||||| | | ||||||||
Sbjct 446 CAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 505
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| |||||||||||||| | || ||||| | |||||||| ||||| ||
Sbjct 506 ATACAAAAAGAATCAACCCTTCACTTGGTGCTCCGTTTACGTGGTGGAAT 555
Score = 120 bits (132), Expect = 5e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | || || || || || ||||| || || ||||| | |||
Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| || |||| | || || || ||||||||||| || || || ||||| ||
Sbjct 613 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCA 672
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| || || ||||| || || |||||| | || ||| | || || || | || || ||
Sbjct 673 GCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAA 732
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||| || |||||||| ||||||||||| | ||| | || ||||| ||
Sbjct 733 TATTCAGAAGGAATCAACATTGCATTTGGTGCTCCGTCTTCGTGGTGGAAT 783
>seq279770
Length=767
Score = 149 bits (164), Expect = 9e-31
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | ||||| || || |||||||| || ||| | ||| | ||| |
Sbjct 410 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 469
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| | || ||||| ||||| || || ||||| ||||||||||||
Sbjct 470 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAA 529
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || || |||||||| || || || | ||||| ||||||| | | || || |||
Sbjct 530 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTCGCCGACTACAAT 589
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| || ||||| || ||||||||||| | ||| | || || |||||
Sbjct 590 ATTCAGAAGGAATCTACCCTGCATTTGGTTCTTCGTCTTCGTGGGGGTAT 639
Score = 120 bits (132), Expect = 5e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597
|||||||| || |||| || || || |||||||| || || | ||| | ||| || |
Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| |||||| ||| |||| || |||||||||||||| || || ||||| || ||
Sbjct 242 -GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCA 300
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| |||||||| ||||| || || ||| | ||||| | ||||| | | ||||| ||
Sbjct 301 ACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAA 360
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747
||| || || ||||| || | ||||||||
Sbjct 361 TATCCAGAAGGAATCTACACTCCATTTGGT 390
>seq280556
Length=777
Score = 132 bits (146), Expect = 7e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596
||||||||| ||| | ||||| ||||||| ||||| || ||| | || |||| ||
Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
| ||||| ||| ||| | ||| || || |||||||||||||| || ||||| || |
Sbjct 702 A-GATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGGGATCCCACCAGACC 644
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
|||||||| | ||||| || || || ||||| || ||| | | || |||| |||||||
Sbjct 643 AACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTATA 584
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| |||||||| ||||| || | || ||||| | ||| | || || || ||
Sbjct 583 ACATTCAAAAGGAATCGACACTTCACTTGGTGCTGCGTCTTCGTGGAGGGAT 532
Score = 102 bits (112), Expect = 1e-16
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||||||| | ||||| ||||||| || || || || |||| |||| ||| |
Sbjct 533 ATGCAAATATTTGTGAAGACCTTAACAGGAAAGACCATCACATTAGAAGTTGAGAGCTCA 474
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || ||| | || ||||| || || || || ||||| || ||||| ||
Sbjct 473 -GACACTATCGACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCA 415
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||||| || ||||| || || || ||||| |||||| | || ||||| | || || ||
Sbjct 414 GCAAAGACTGATTTTCGCTGGGAAGCAATTGGAGGATGGACGTACATTGGCTGACTACAA 355
Query 124718 TATTCAAAAAGAATCAAC 124735
|||||||| ||||| ||
Sbjct 354 CATTCAAAAGGAATCCAC 337
>seq21568
Length=652
Score = 91.5 bits (100), Expect = 2e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
|| |||||||| || || || || || || |||||||| || | || ||||| ||||||
Sbjct 231 AAGATTCAAGACAAGGAGGGGATTCCTCCAGATCAACAGAGATTGATCTTTGCTGGAAAA 172
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735
||||| |||||| |||| || || | ||||| |||||||| ||||| || ||
Sbjct 171 CAATTGGAGGATGGTCGGACTTTGGCTGATTACAATATTCAGAAAGAGTCCAC 119
>seq122851
Length=247
Score = 87.8 bits (96), Expect = 3e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 124648 CACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAG 124707
||||||| ||||| ||| | |||||||| || || ||| | || || || | || | |
Sbjct 1 CACCTGACCAACAGAGGTTGATTTTTGCTGGTAAGCAACTTGAAGACGGTAGGACTCTGG 60
Query 124708 AAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767
|||||| ||||||||||| ||||| || ||||||||||| | || || || ||||| |
Sbjct 61 CAGATTACAATATTCAAAAGGAATCGACGTTGCATTTGGTGCTTCGATTGCGCGGTGGAA 120
Query 124768 T 124768
|
Sbjct 121 T 121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 752574766361600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |