Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq44495 125 6e-24 seq281289 116 3e-21 seq48980 114 1e-20 seq281664 107 2e-18 seq126021 95.1 1e-14 seq21568 89.7 4e-13 seq279770 84.2 2e-11 >seq44495 Length=1402 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||||||||| | ||| | |||||| ||||| || ||| Sbjct 722 GTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCAAGCTGCTTCCCA 781 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | ||||||||| ||||| ||||| |||||||| |||||| ||| Sbjct 782 GCGAAGATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGAATTTTAGCTTTC 841 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | |||||| ||||| | ||| | || || ||||||| || Sbjct 842 ACATTATCGATCGTGTCAGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTC 901 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 902 TTCACGAAGATCTGCAT 918 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || ||||| || || || ||| | ||| || Sbjct 937 CACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTC 996 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||||||| |||| || | |||||| || || || || |||||||||||| Sbjct 997 CAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1056 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||||| ||||| ||||| | ||| | || || Sbjct 1057 GATCTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTCTT 1116 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || ||||||||||| Sbjct 1117 GCCGGTCAACGTCTTGACGAAAATCTGCAT 1146 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | ||| | || ||||| || || ||||| |||||| Sbjct 1146 TACCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGG 1205 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || |||||| || || || || ||| |||| || | ||||| || || | Sbjct 1206 CAAGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGG 1265 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || ||| ||||| | |||| ||| || | | || | Sbjct 1266 GAATACCCTCCTTGTCCTGGATCTTTGCCTTAACGTTATCGATGGTATCAGAGGATTCAA 1325 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | ||||| || ||||| || ||||| ||||| ||||| Sbjct 1326 CCTCGAGGGTGATGGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 >seq281289 Length=787 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || ||||| | | ||||||||| | || || |||||||| ||||| |||||| Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||||||||| |||||||| | || || | ||||| || ||||| Sbjct 492 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGG 433 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||| || || |||||| || || | || | || || | || || ||| Sbjct 432 ATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACC 373 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||||||||| |||||||| ||||| || ||||| Sbjct 372 TCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq48980 Length=3483 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | || || |||||| | Sbjct 1031 CAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCA 972 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || || ||| | |||||||||||||| || || ||||| |||||||| || || Sbjct 971 TCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTATCCTGAA 912 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | |||| ||| || | ||||||||||||| || | || || | Sbjct 911 TCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCC 852 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || ||||| || || |||||||| Sbjct 851 CGGTAAGCGTTTTCACGAAGATCTGCAT 824 >seq281664 Length=792 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || |||||||||||||| | || | ||| || ||||| |||||| Sbjct 124 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCA 183 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | |||||||| || ||||| || || |||||||| |||||| ||| Sbjct 184 GCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTTTGCCTTA 243 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| || || | ||||| ||||| | ||| | || || || ||||| || Sbjct 244 ACATTGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGTC 303 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 304 TTGACAAAGATCTGCAT 320 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || | ||| | |||||| ||||| ||||| Sbjct 352 GTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCG 411 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||| || || || ||||| |||||||| ||||||| || Sbjct 412 GCAAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTC 471 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | |||||||||||||| ||| | || || || |||| ||| Sbjct 472 ACGTTGTCGATGGTATCAGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTC 531 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 532 TTAACGAAGATCTGCAT 548 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || | |||| |||||||| || || |||||||| || Sbjct 548 TACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTG 607 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||||| | ||||||||||||| ||||||| | ||| || || || | Sbjct 608 CAAGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGG 667 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||| || || || | || | ||||| | ||| | Sbjct 668 GGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAA 727 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | ||| | || || ||||| |||||||| |||||||| |||||| Sbjct 728 CCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATG 777 >seq126021 Length=250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| |||||||||||||||||| | || || ||| || Sbjct 226 CACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCTAGTGTACGACCATCTTC 167 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| | | |||||||| || || || || ||||||||| Sbjct 166 GAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGAATACCTTCCTTGTCTTG 107 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||| || | |||| ||||| | ||| || || || | || | || || Sbjct 106 AATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTTCAACTTCTAGTGTAATAGTCTT 47 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| ||||| Sbjct 46 CCCCGTGAGCGTTTTGACGAAAATTTGCAT 17 >seq21568 Length=652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCT 118587 |||||| || | || || || ||||| ||||||||||| ||| | ||| | ||| | Sbjct 328 CACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT-AGAGTTCTGCCATCTT 386 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | || || || || || |||| || | |||||| || || || || ||||| |||||| Sbjct 387 CCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGTCTT 446 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||| || || | |||| |||||| | || || || || | || | || | Sbjct 447 GAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGATGGTCT 506 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || || || ||||||||||| Sbjct 507 TGCCAGTCAATGTCTTCACGAAAATCTGCAT 537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || |||||||| ||||| |||||||| || ||| || |||||| | || Sbjct 112 GTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCCAAAGTCCGACCATCCTCCAATTG 171 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| |||| | | ||| ||||| ||||| || |||||||||||| ||| || Sbjct 172 TTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTT 231 Query 118655 T 118655 | Sbjct 232 T 232 >seq279770 Length=767 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||| || || ||||| ||||| ||| | ||| || ||||| Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || || | ||| ||||| || || || |||||||||||| Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | || || | || || ||||| | || | |||||| Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||| Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432217178881504