Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_002484.2
Length=56426
Score E
Sequences producing significant alignments: (Bits) Value
seq157809 414 4e-111
seq106406 361 2e-95
>seq157809
Length=287
Score = 414 bits (458), Expect = 4e-111
Identities = 264/287 (92%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 12706 AGGCGAACGAGGATGCAGCGAAGGCTCAGGCCTTCCGTGCAACGCTCAATGAATCGAACG 12765
|||||||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||
Sbjct 287 AGGCGAACGAGGATGCTGCGAAGGCTCAGGCATTCAGTGCAACGCTTAACGAATCGAACG 228
Query 12766 CAACTGCTCGGGCAGGATTTGCGATTGATCTGGCCGGATCGGGCAGCGGCGACAAGCTGA 12825
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 227 TAACTGCTCGGGCAGGATTTGCGATTGAACTGGCAGGATCGGGAAGCGGCGACAAGCTGA 168
Query 12826 GGGAGCGACTGCGCGCAGACCTGGAGATCCAGCAGGATTACAACAAACAGCTTGCCGATC 12885
| ||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 167 GAGAGCGACTGCGGGCAGATCTGGAAATCCAGCAGGACTACAATAAACAGCTTGCCGATC 108
Query 12886 TACAGAAGCAGTTCAACAGCGCAGAAATCAGCAAGGAACTCTACGACCAAGAAACTGACC 12945
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 107 TCCAGAAGCAGTTCAACAGTGCAGAAATCAGCAAGGAACTCTACGACCAAGAAACTGATC 48
Query 12946 TTCTGCGCCAGGCTCTCGCTGAGCGTCTGGAAATCCAGCATGAGTAC 12992
| |||||||||||| | || ||||| |||||||||||||||||||||
Sbjct 47 TCCTGCGCCAGGCTTTGGCCGAGCGCCTGGAAATCCAGCATGAGTAC 1
>seq106406
Length=233
Score = 361 bits (400), Expect = 2e-95
Identities = 220/233 (94%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 17805 ATATGCGGAGAAGACCATTAAGCGCGGCGTGATCTCTGCGGCCCGAGACGAGCCAAGGAC 17864
||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 233 ATATGCGGAGAAGACGATCAAGCGCGGCGTGATCTCTGCGGCACGAGACGAGCCCAGGAC 174
Query 17865 CACATTCGGGCACATGTACTCGCCGCAGAACATGGATGGTCCACTGAGGATCAGCATCAG 17924
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 173 CACGTTCGGGCACATGTACTCGCCGCAGAACATGGATGGCGTACTGAAGATCAGCATCAG 114
Query 17925 CGCGCCGTCTGAGGACGACTACGACGGCGTCGATGTAGAGTTCGTCAATGCCAACGGCTG 17984
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 113 CGCGCCGTCTGAGGACGACTACGACGGCGTCGATGTTGAGTTCGTCAATGCCAACGGCTG 54
Query 17985 GATCGAAGATACCGTCCAGTGCCGCCTGCCCGGCGATGTTGGCAGGAAGGTCG 18037
||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 53 GATCGAAGATACCGTTCAGTGCCGCCTTCCCGGCGATGTCGGCAGGAAGGTCG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 179787823092672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |