Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq280556 107 3e-18 seq281289 95.1 2e-14 seq279770 95.1 2e-14 seq277496 95.1 2e-14 seq124980 95.1 2e-14 >seq280556 Length=777 Score = 107 bits (118), Expect = 3e-18 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | || ||||| ||| || || |||||||| | | ||| |||| ||| || Sbjct 553 ACCAAGTGAAGTGTCGATTCCTTTTGA-ATGTTATAATCGGCTAAAGTCCTGCCATCTTC 611 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || ||||| ||||| || ||||| || || || || || |||||||||||||| Sbjct 612 CAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGTGGGATCCCTTCTTTATCTTG 671 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 |||||||||||| || ||||| | ||||||||||| Sbjct 672 GATCTTAGCTTTAACGTTATCAATAGTATCTGAACTCTCAACTTCCAAAGTGATTGTTTT 731 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||||||| || || | || ||||||||| Sbjct 732 TCCTGTTAAGGTCTTCACAAAAATTTGCATT 762 >seq281289 Length=787 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | |||||||| || || ||||| || ||||| || || | Sbjct 782 TTCCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCG 723 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | || ||| || | |||||| ||||| ||||| | ||| ||||| || || | Sbjct 722 CCAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGG 663 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | ||||| ||||||||||| ||||| || ||||| | Sbjct 662 GGATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCA 603 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 | |||| ||||| |||||||| || | ||||| | ||| ||||||||| Sbjct 602 CCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/209 (67%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | || |||||||| ||| |||||||| | || |||| | ||| || Sbjct 534 ACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCG 475 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | || |||||||||||||| | |||||||| || ||||| ||||| |||||||| || Sbjct 474 AGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCTTTATCCTGA 415 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||| |||||||| || || || || |||||||| Sbjct 414 ATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTTATTGTTTTG 355 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || | ||||| | || |||||||| Sbjct 354 CCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq279770 Length=767 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/238 (67%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | |||||||| | |||||||| || ||||| ||||| | | Sbjct 408 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 349 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || || || | ||| || |||||||| || | || || || || || ||| Sbjct 348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 289 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || ||||||||||| || ||||| ||||| || Sbjct 288 ATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACC 229 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAA 146288 || || ||||||||||| || || | ||||| | ||| |||||||| | | ||||| Sbjct 228 TCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATCTGTTAAGAAA 171 >seq277496 Length=739 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || || || ||||| || || ||||| || | || || || || || ||||||||| Sbjct 279 GTACCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAATCT 220 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || ||||| || ||||||||||| ||||| ||||| || ||| Sbjct 219 GCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGA 160 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 159 GGAATACCTTCCTTGTCCTG 140 >seq124980 Length=249 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || || | || | ||| |||||||| || || || || | | Sbjct 159 CCACCCCGAAGCCGTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCA 100 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || ||| || | ||| || || ||||| ||||||| |||||||||||| ||| Sbjct 99 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAATCGTTGCTGATCCGGGGGA 40 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 39 ATTCCTTCCTTATCCTG 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740690664663040