Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 181 1e-40
seq220814 109 5e-19
seq218924 91.5 1e-13
>seq273947
Length=700
Score = 181 bits (200), Expect = 1e-40
Identities = 432/642 (67%), Gaps = 17/642 (3%)
Strand=Plus/Minus
Query 15912 CATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAA 15971
||||| | ||| ||| ||||| || || ||||||||||| | |||||| |||||||
Sbjct 632 CATTACCATTTAGATTAGACATCACAGATGCCTTTTGATATTCCCCAACTCTTTTTTCAA 573
Query 15972 AGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAAC 16031
||||||| || || |||| |||||||| |||||| ||||||| ||| ||||||||
Sbjct 572 AGAAATTGGTCTTCCCTTGCAATGAAATCAATTCCATCCAATCAAATGGA--TTTTGAAC 515
Query 16032 A--ATAGTATTTATCGCATCCCAA--TTCCAACAATAATCTATCCGCCACAAATTCTATA 16087
| |||| ||| | | || || |||||| |||||||| ||||||||||| ||
Sbjct 514 ATTATAGATTTTGCCATACCCTAAAGCTCCAAC--CAATCTATCGGCCACAAATTCAATG 457
Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147
|| || |||| ||||| | |||||||| | || |||||| | || || |
Sbjct 456 TATTGGCTCATCAAATCGCCATTCATTCCAACTAGAGCAACAGGCAAGGCATCACACACG 397
Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGG 16206
|| | | ||||||| || ||||| | | ||||| | | || | ||| | ||
Sbjct 396 AATTCCCTCTCTATATCTACGGCTTCGGTAA--CAATCTCATTC-ACTCGATTCTCACTC 340
Query 16207 AGGGT-TTAAT-AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCC 16264
|| | || | || | | ||| | |||||||||||| ||||| | || |||||
Sbjct 339 AGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAAATCGCAATGAAGACCCTCGTCT 280
Query 16265 CTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAA 16324
| || ||||| ||||| ||||| || || ||||||| ||| |||||||| | |||
Sbjct 279 CGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCATTAATCCACGTTTTTTCAACCAG 220
Query 16325 AATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAAT 16384
|| || | | || ||| || ||||| || |||||||| |||||||| | |
Sbjct 219 AAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTCAACACAAGCAAATGCCAAAATA 160
Query 16385 CGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgt 16444
||||| | ||| | | | || || ||||| ||| ||||||| || || |
Sbjct 159 CGCTCGGCAAACGAT---TCCGTGCTGTCGATCCACTTTAACGCCCAATCAGCCTTCTTC 103
Query 16445 ttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAA 16504
|| |||||| | |||| |||||| |||||| | | || || || ||||
Sbjct 102 TTGACACAGGGGACCGTCTCGATTGCACGAAATAATCGACTCTTCTCGTTTGAATCTTTG 43
Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546
|||||||| || | || | ||| ||||| || || || |||
Sbjct 42 ATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAGTGGATA 1
>seq220814
Length=412
Score = 109 bits (120), Expect = 5e-19
Identities = 152/209 (73%), Gaps = 8/209 (4%)
Strand=Plus/Minus
Query 15912 CATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAA 15971
|||| | ||| ||||||||| || || ||||||||||||| |||||| || ||||
Sbjct 253 CATTTCCATTTAAATTTGACATCACAGATGCCTTTTGATATTCACCAACTCTTTTCTCAA 194
Query 15972 AGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAAC 16031
||||||| || || || | |||||||| ||||| ||||||| ||| ||||||||
Sbjct 193 AGAAATTAGTCTTCCCCTGCAATGAAATCAACTCCATCCAATCAAATGGA--TTTTGAAC 136
Query 16032 --AATAGTATTTATCGCATCCCAA--TTCCAACAATAATCTATCCGCCACAAATTCTATA 16087
||| ||| || | || || |||||| || ||||| | ||||||||||||
Sbjct 135 GTTGTAGATTTTCTCATACCCTAAGGCTCCAAC--CAACCTATCTGTCACAAATTCTATG 78
Query 16088 TACTGTTTCATTAAATCACAGTTCATTCC 16116
|| || |||| ||||| | ||||||||
Sbjct 77 TATTGGCTCATCAAATCCCCATTCATTCC 49
>seq218924
Length=406
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293
|||||||||||||||||| | ||||| || || || ||||| ||||| || || |
Sbjct 97 ACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTTAA 156
Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCC--AAAATATAGCGGCAAATGAACCAGAAAAG 16351
|| |||||||| || |||||||| | || |||||| ||| | || | ||| || |||
Sbjct 157 TCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACT--ACCTGAGAAG 214
Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411
|| || || ||||| || || || | | |||||| || ||| | | | ||||
Sbjct 215 AAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAACGAT---TCTGTACTG 271
Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAG 16453
|| ||||| || ||||||| || |||| || || |||
Sbjct 272 TCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAG 313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460748025483200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |