Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq273947 181 1e-40 seq220814 109 5e-19 seq218924 91.5 1e-13 >seq273947 Length=700 Score = 181 bits (200), Expect = 1e-40 Identities = 432/642 (67%), Gaps = 17/642 (3%) Strand=Plus/Minus Query 15912 CATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAA 15971 ||||| | ||| ||| ||||| || || ||||||||||| | |||||| ||||||| Sbjct 632 CATTACCATTTAGATTAGACATCACAGATGCCTTTTGATATTCCCCAACTCTTTTTTCAA 573 Query 15972 AGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAAC 16031 ||||||| || || |||| |||||||| |||||| ||||||| ||| |||||||| Sbjct 572 AGAAATTGGTCTTCCCTTGCAATGAAATCAATTCCATCCAATCAAATGGA--TTTTGAAC 515 Query 16032 A--ATAGTATTTATCGCATCCCAA--TTCCAACAATAATCTATCCGCCACAAATTCTATA 16087 | |||| ||| | | || || |||||| |||||||| ||||||||||| || Sbjct 514 ATTATAGATTTTGCCATACCCTAAAGCTCCAAC--CAATCTATCGGCCACAAATTCAATG 457 Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147 || || |||| ||||| | |||||||| | || |||||| | || || | Sbjct 456 TATTGGCTCATCAAATCGCCATTCATTCCAACTAGAGCAACAGGCAAGGCATCACACACG 397 Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGG 16206 || | | ||||||| || ||||| | | ||||| | | || | ||| | || Sbjct 396 AATTCCCTCTCTATATCTACGGCTTCGGTAA--CAATCTCATTC-ACTCGATTCTCACTC 340 Query 16207 AGGGT-TTAAT-AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCC 16264 || | || | || | | ||| | |||||||||||| ||||| | || ||||| Sbjct 339 AGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAAATCGCAATGAAGACCCTCGTCT 280 Query 16265 CTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAA 16324 | || ||||| ||||| ||||| || || ||||||| ||| |||||||| | ||| Sbjct 279 CGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCATTAATCCACGTTTTTTCAACCAG 220 Query 16325 AATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAAT 16384 || || | | || ||| || ||||| || |||||||| |||||||| | | Sbjct 219 AAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTCAACACAAGCAAATGCCAAAATA 160 Query 16385 CGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgt 16444 ||||| | ||| | | | || || ||||| ||| ||||||| || || | Sbjct 159 CGCTCGGCAAACGAT---TCCGTGCTGTCGATCCACTTTAACGCCCAATCAGCCTTCTTC 103 Query 16445 ttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAA 16504 || |||||| | |||| |||||| |||||| | | || || || |||| Sbjct 102 TTGACACAGGGGACCGTCTCGATTGCACGAAATAATCGACTCTTCTCGTTTGAATCTTTG 43 Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 |||||||| || | || | ||| ||||| || || || ||| Sbjct 42 ATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAGTGGATA 1 >seq220814 Length=412 Score = 109 bits (120), Expect = 5e-19 Identities = 152/209 (73%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 15912 CATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAA 15971 |||| | ||| ||||||||| || || ||||||||||||| |||||| || |||| Sbjct 253 CATTTCCATTTAAATTTGACATCACAGATGCCTTTTGATATTCACCAACTCTTTTCTCAA 194 Query 15972 AGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAAC 16031 ||||||| || || || | |||||||| ||||| ||||||| ||| |||||||| Sbjct 193 AGAAATTAGTCTTCCCCTGCAATGAAATCAACTCCATCCAATCAAATGGA--TTTTGAAC 136 Query 16032 --AATAGTATTTATCGCATCCCAA--TTCCAACAATAATCTATCCGCCACAAATTCTATA 16087 ||| ||| || | || || |||||| || ||||| | |||||||||||| Sbjct 135 GTTGTAGATTTTCTCATACCCTAAGGCTCCAAC--CAACCTATCTGTCACAAATTCTATG 78 Query 16088 TACTGTTTCATTAAATCACAGTTCATTCC 16116 || || |||| ||||| | |||||||| Sbjct 77 TATTGGCTCATCAAATCCCCATTCATTCC 49 >seq218924 Length=406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 |||||||||||||||||| | ||||| || || || ||||| ||||| || || | Sbjct 97 ACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTTAA 156 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCC--AAAATATAGCGGCAAATGAACCAGAAAAG 16351 || |||||||| || |||||||| | || |||||| ||| | || | ||| || ||| Sbjct 157 TCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACT--ACCTGAGAAG 214 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || || || ||||| || || || | | |||||| || ||| | | | |||| Sbjct 215 AAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAACGAT---TCTGTACTG 271 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAG 16453 || ||||| || ||||||| || |||| || || ||| Sbjct 272 TCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAG 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460748025483200