Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq281664 113 4e-20 seq48980 102 6e-17 seq44495 98.7 8e-16 >seq281664 Length=792 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || || | | || ||||| || ||||| || || Sbjct 129 CTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAA 188 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||||||| ||||| ||||| | || ||||||||| |||||| |||||| Sbjct 189 GATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATT 248 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | || || ||||||||||| ||| || ||||| || ||||| ||||| || Sbjct 249 GTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGTCTTGAC 308 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 309 AAAGATCTGCAT 320 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTC---AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGC 45201 ||||||||| ||||||||||| | | |||| || |||| |||| |||||||| || Sbjct 585 CTCCTTCTGGATGTTGTAGTC-TGCAAGAGTT--CGGCCGTCCTCCAACTGTTTTCCAGC 641 Query 45202 GAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 ||| || | | ||||||||| || || | ||| ||||||||| ||| || ||| || Sbjct 642 GAAGATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCAC 701 Query 45262 CGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTT 45321 | | |||| | ||| ||||||| ||| || ||||| || || ||||| || Sbjct 702 GTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTT 761 Query 45322 CACAAAGATTTGCATG 45337 ||||| ||||||||| Sbjct 762 GACAAAAATTTGCATG 777 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || | | || ||||| || |||||||| || Sbjct 357 CTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAA 416 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| | || ||||| || || | || ||||||||| ||||||| ||| || Sbjct 417 GATCAATCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTCACGTT 476 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || | ||| ||||| | ||| || ||||| || |||| |||||| || Sbjct 477 GTCGATGGTATCAGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAAC 536 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 537 GAAGATCTGCAT 548 >seq48980 Length=3483 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 ||||| || | || |||||| ||||||||| |||||||||||| ||| ||| | Sbjct 1038 CTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCA 979 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || |||| || || |||||||| || | ||||| ||||| || || | |||||||| Sbjct 978 TCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTA 919 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||| ||| ||| || | | | | || || ||| ||||| | || || Sbjct 918 TCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATG 859 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| || || || || ||||| ||||| ||||| ||| Sbjct 858 GTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATATTG 820 >seq44495 Length=1402 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| ||||| ||||| || | | | || ||| Sbjct 938 ACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTCC 997 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| |||| || ||| ||||| || || | ||||||||||| Sbjct 998 AGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 1057 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| || ||| ||||| | ||| || |||||| Sbjct 1058 ATCTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTCTTG 1117 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || || || ||||| Sbjct 1118 CCGGTCAACGTCTTGACGAAAATCTGCAT 1146 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| || || | | || || || || Sbjct 715 GTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCAAGCTG 774 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| || ||| || || ||||| | || ||||||||| |||||| Sbjct 775 CTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGAATTTT 834 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | |||| | ||||||||||| ||| || ||||| || || Sbjct 835 AGCTTTCACATTATCGATCGTGTCAGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCGGT 894 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 895 CAAGGTCTTCACGAAGATCTGCAT 918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393606092127352