Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq281664 113 4e-20
seq48980 102 6e-17
seq44495 98.7 8e-16
>seq281664
Length=792
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||||||||||||||| || || | | || ||||| || ||||| || ||
Sbjct 129 CTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAA 188
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||||||| ||||| ||||| | || ||||||||| |||||| ||||||
Sbjct 189 GATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATT 248
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | || || ||||||||||| ||| || ||||| || ||||| ||||| ||
Sbjct 249 GTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGTCTTGAC 308
Query 45325 AAAGATTTGCAT 45336
|||||| |||||
Sbjct 309 AAAGATCTGCAT 320
Score = 98.7 bits (108), Expect = 8e-16
Identities = 141/196 (72%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTC---AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGC 45201
||||||||| ||||||||||| | | |||| || |||| |||| |||||||| ||
Sbjct 585 CTCCTTCTGGATGTTGTAGTC-TGCAAGAGTT--CGGCCGTCCTCCAACTGTTTTCCAGC 641
Query 45202 GAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261
||| || | | ||||||||| || || | ||| ||||||||| ||| || ||| ||
Sbjct 642 GAAGATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCAC 701
Query 45262 CGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTT 45321
| | |||| | ||| ||||||| ||| || ||||| || || ||||| ||
Sbjct 702 GTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTT 761
Query 45322 CACAAAGATTTGCATG 45337
||||| |||||||||
Sbjct 762 GACAAAAATTTGCATG 777
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||||||||||||||| || | | || ||||| || |||||||| ||
Sbjct 357 CTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAA 416
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| | || ||||| || || | || ||||||||| ||||||| ||| ||
Sbjct 417 GATCAATCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTCACGTT 476
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | | || | ||| ||||| | ||| || ||||| || |||| |||||| ||
Sbjct 477 GTCGATGGTATCAGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAAC 536
Query 45325 AAAGATTTGCAT 45336
||||| |||||
Sbjct 537 GAAGATCTGCAT 548
>seq48980
Length=3483
Score = 102 bits (112), Expect = 6e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181
||||| || | || |||||| ||||||||| |||||||||||| ||| ||| |
Sbjct 1038 CTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCA 979
Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241
|| |||| || || |||||||| || | ||||| ||||| || || | ||||||||
Sbjct 978 TCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTA 919
Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301
||| ||| ||| ||| || | | | | || || ||| ||||| | || ||
Sbjct 918 TCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATG 859
Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||||| || || || || ||||| ||||| ||||| |||
Sbjct 858 GTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATATTG 820
>seq44495
Length=1402
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| || ||||||||| ||||| ||||| || | | | || |||
Sbjct 938 ACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTCC 997
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||| ||||| |||| || ||| ||||| || || | |||||||||||
Sbjct 998 AGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 1057
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| || ||| ||||| | ||| || ||||||
Sbjct 1058 ATCTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTCTTG 1117
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||||| || || || |||||
Sbjct 1118 CCGGTCAACGTCTTGACGAAAATCTGCAT 1146
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| |||||||||||||||||| || || | | || || || ||
Sbjct 715 GTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCAAGCTG 774
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| |||| || ||| || || ||||| | || ||||||||| ||||||
Sbjct 775 CTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGAATTTT 834
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
|| || | | |||| | ||||||||||| ||| || ||||| || ||
Sbjct 835 AGCTTTCACATTATCGATCGTGTCAGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCGGT 894
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||| ||||| |||||
Sbjct 895 CAAGGTCTTCACGAAGATCTGCAT 918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 393606092127352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |