Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq273947 145 7e-30 seq218924 125 7e-24 >seq273947 Length=700 Score = 145 bits (160), Expect = 7e-30 Identities = 405/609 (67%), Gaps = 17/609 (3%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||||||||| | |||||||||||||||||| || || || |||| || ||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 13973 TCCATAAAATCAAATGGATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATAG 14031 ||||| |||||||||||||| | ||| || | | ||| || | |||| || | Sbjct 540 TCCATCCAATCAAATGGATTT-TGAACATTATAGATTTTGCCATACCCTAAAGCTCCAAC 482 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 |||||||| || | || ||||| ||||| ||| ||||| | |||||| || | ||| Sbjct 481 CAATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAG 422 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 ||||| | || | ||||| | |||||| || || ||| ||| Sbjct 421 AGCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCG---GTAAC 365 Query 14152 AATCGTAATAATTTCATT-AGAAGGAGGATATT--TTA--GATGTTTAAAAATTAAACAC 14206 |||| | | | | ||| | || | || | | ||| || || ||||| Sbjct 364 AATCTCATTCACTCGATTCTCACTCAGTTTCTTCCTCAACAATGAATACAA--CAAACAA 307 Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 |||||||| |||||||| ||||| |||| ||| | || ||||| ||||| | ||| Sbjct 306 GCAAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCA 247 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATAT 14325 ||||| ||||| |||||||| ||||| || | || ||| ||| || || ||||| || Sbjct 246 GGCATTAATCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAGCTACCTGAGAAGAAGAT 188 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385 ||| ||||| |||||| || | | || || |||||||| | | || ||| || Sbjct 187 TCCTTCAACACAAGCAAATGCCAAAATACGCTCGGCAAACGATTCCGTGCTG-TCG--AT 131 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||| ||| ||||| |||| || || || | | | | || || || ||| ||| Sbjct 130 CCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAA 71 Query 14446 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 ||| | |||||| || | | | || || || || | ||| | || ||||| || Sbjct 70 TAATCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTC 11 Query 14506 AGAGTGTAT 14514 |||||| || Sbjct 10 AGAGTGGAT 2 >seq218924 Length=406 Score = 125 bits (138), Expect = 7e-24 Identities = 221/317 (70%), Gaps = 9/317 (3%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| ||||||||||||||||| || |||||||| ||| | || ||||| || ||| Sbjct 95 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTT 154 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAA 14319 ||||| ||||| | || |||||||||||||| || || | ||| ||| || || || Sbjct 155 AATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAG-AGCAGAAACTACCTGAGAA 213 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||| ||||||||||| ||| ||||| | | || || | |||||| || | ||| Sbjct 214 GAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAACGATTCTGTACTGT- 272 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 ||||| || ||||| |||| ||||| || | | | ||||||||||| Sbjct 273 --CAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAATAGC 330 Query 14440 ATTAAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 | ||||| | | |||||| | | | |||| || || || |||| || | || Sbjct 331 ACGGAATAACCGATTCTTCTCAATCGAATCCTTG--ATATAGGTTTCAAGGAGAAGACTG 388 Query 14498 TACATTTCAGAGTGTAT 14514 ||||| |||||||| || Sbjct 389 TACATCTCAGAGTGGAT 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480505982116160