Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq230622 145 7e-30 seq44495 114 1e-20 seq273947 105 6e-18 seq280556 102 7e-17 seq281664 91.5 1e-13 >seq230622 Length=445 Score = 145 bits (160), Expect = 7e-30 Identities = 208/289 (72%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 ||||||||| ||| | || || | |||||| | |||||||| ||||| ||||| || || Sbjct 292 CATGTTTCCAATTCAGTACCCTCAAATTTGGGAGATGTACAAGAAGGCCGAAGCTTCCTT 233 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 ||||||| ||| ||||| || || || ||||||| || ||||||| ||| | || Sbjct 232 CTGGACCGCCGAGGAAGTCGATCTCTCACAGGATCTTCGCCATTGGGAGTCCTT--AACT 175 Query 57665 ATCTGAGAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATT 57722 | ||||| | || || | |||||| | || || || || ||||| ||||| ||| Sbjct 174 CCCGACGAGAAGCACTTCATCACTCACGTGCTTGCCTTCTTTGCTGCATCTGATGGCATT 115 Query 57723 GTTAACGAGAATTTGGTCGAAAGATTTTCAC--AAGAAGTGCAAGTGACGGAGGCGAGAT 57780 ||| |||||| | | | | | ||||| ||||||| ||||| | || || ||| Sbjct 114 GTTTTGGAGAATCTTGCTGGACG--TTTCATGAAAGAAGTTCAAGTCTCTGAAGCCAGAG 57 Query 57781 GCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 |||||| ||||||||| | ||||||||||| | || || || ||||| Sbjct 56 CCTTTTATGGATTTCAAATCGCCATTGAAAATATCCACTCTGAGATGTA 8 >seq44495 Length=1402 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||||||||| |||||||| ||||| |||||| |||| |||||| | || Sbjct 1374 ATGCAAATTTTCGTAAAGACCCTGACAGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1315 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| |||| | | || || || ||||||||| || | || || ||||| Sbjct 1314 GATACCATCGATAACGTTAAGGCAAAG-ATCCAGGACAAGGAGGGTATTCCCCCAGACCA 1256 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || ||||| || || || | || || | || | ||||||||| Sbjct 1255 GCAAAGACTTATCTTCGCCGGGAAGCAACTAGAGGATGGTCGTACCCTTGCCGATTATAA 1196 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || ||||||||||| || || Sbjct 1195 CATCCAGAAGGAGTCGACTCTTCACCTTGT 1166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || Sbjct 918 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCT 859 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| ||||||||||||| | || || || ||| Sbjct 858 GACACGATCGATAATGTGAAAGCTAAAATTCAGGACAAGGAAGGCATCCCTCCGGATCAG 799 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| || ||| | || || | |||| | ||||| ||| Sbjct 798 CAGAGGCTGATCTTCGCTGGGAAGCAGCTTGAGGATGGAAGGACTCTCGCTGATTACAAC 739 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| || || || Sbjct 738 ATTCAGAAGGAGTCCACTCTTCACCTCGTCCT 707 >seq273947 Length=700 Score = 105 bits (116), Expect = 6e-18 Identities = 332/507 (65%), Gaps = 17/507 (3%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| || ||| | | || ||||| | ||| |||| |||| |||||| | Sbjct 104 AAGAAGGCTGATTGGGCGTTAAAGTGGATCGACAGC---ACGGAATCGTTTGCCGAGCGT 160 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATT 58033 | | || || || || ||||| || ||||| || || ||||| ||| || | || Sbjct 161 ATTTTGGCATTTGCTTGTGTTGAAGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATT-TT 219 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| |||| ||||| || | ||||| || || || || || |||||||| || || Sbjct 220 CTGGTTGAAAAAACGTGGATTAATGCCTGGACTCACATTCTCAAATGAGTTGATTTCACG 279 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGT----CAATA 58149 ||||||||||| ||| |||||||| || | |||| | |||||| || | Sbjct 280 AGACGAGGGTCTTCATTGCGATTTTGCTTGTTTGTTGTATT----CATTGTTGAGGAAGA 335 Query 58150 AACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209 ||| || | |||| | || ||| | ||||| || || | || || | || | Sbjct 336 AACTGAGTGAGAATCGAGTGAATGAGATTGTTACCGAAGCCGTAGATATAGAGAGGGAAT 395 Query 58210 TTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGT 58269 | || || ||| | || || || | | || ||||| ||||||||| | | Sbjct 396 TCGTGTGTGATGCCTTGCCTGTTGCTCTAGTTGGAATGAATGGCGATTTGATGAGCCAAT 455 Query 58270 ACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAAC-TGATTGGAGAGCGTCAT-TACAA 58327 ||||||| ||||| ||||| ||| || | | || | | | | | || || || || Sbjct 456 ACATTGAATTTGTGGCCGATAGA--TTGGTTGGAGCTTTAGGGTATGGCAAAATCTATAA 513 Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387 ||||||| ||||||| ||| | |||| || | | || ||||| || || || Sbjct 514 TGTTCAAAATCCATTTGATTGGATGGAATTGATTTCATTGCAAGGGAAGACCAATTTCTT 573 Query 58388 CGaaaaaaaaGTTAGCGAATATCAAAA 58414 ||||||| |||| | ||||||||||| Sbjct 574 TGAAAAAAGAGTTGGGGAATATCAAAA 600 >seq280556 Length=777 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| | ||||| ||||| ||||| | || ||||| || Sbjct 761 ATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTCA 702 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || |||| | || | ||| | || || ||||| | || || ||||| Sbjct 701 GATACTATTGATAACGTTAAAGCTAAGA-TCCAAGATAAAGAAGGGATCCCACCAGACCA 643 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | |||| |||||||| || || |||||||| | |||| | ||||||||| Sbjct 642 ACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTATAA 583 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| |||||||| ||||| |||| || Sbjct 582 CATTCAAAAGGAATCGACACTTCACTTGGTGCT 550 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| | ||||| || || ||||| | || ||||| || Sbjct 533 ATGCAAATATTTGTGAAGACCTTAACAGGAAAGACCATCACATTAGAAGTTGAGAGCTCA 474 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || | ||| ||||||||| || | || || |||||| Sbjct 473 GACACTATCGACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 414 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | || || |||||||| || || ||||| || | | | || || || || || Sbjct 413 CAAAGACTGATTTTCGCTGGGAAGCAATTGGAGGA-TGGACGTACATTGGCTGACTACAA 355 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| ||||| || || || || || ||| Sbjct 354 CATTCAAAAGGAATCCACCCTCCACCTTGTCCTT 321 >seq281664 Length=792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || || ||||| || || || || |||||| | || ||||| | || Sbjct 777 CATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTC 718 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || |||||||||||| | || || ||||| Sbjct 717 AGACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCA 658 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || |||||||| ||||||||||| ||| ||| | || || || Sbjct 657 ACAGAGACTCATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAA 598 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || || ||||| ||||| || Sbjct 597 CATCCAGAAGGAGTCTACTCTCCATCTTGT 568 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || || || |||||| |||| || || || Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| ||||||||||||| | || || |||||| Sbjct 488 GATACCATCGACAACGTGAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 429 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || || || || ||| |||| || | |||| | || || ||| Sbjct 428 CAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAAC 369 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||| || || ||| | |||||||| || Sbjct 368 ATTCAGAAGGAGTCAACCCTTCACCTTGTCCTTCGTCTGAGGGGAGG 322 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||||||| || || |||||| | || || || || Sbjct 320 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCTTGGAGGTGGAGAGTTCT 261 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| |||||||||||| | || || |||||| Sbjct 260 GATACAATCGACAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCTCCAGACCAG 201 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || ||| ||||||| | ||| | ||||| ||| Sbjct 200 CAGCGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGAAGGACCCTTGCTGATTACAAC 141 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || || || Sbjct 140 ATTCAGAAGGAGTCTACCCTTCACCTTGTCCT 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444066291527040