Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq273947 134 3e-26 >seq273947 Length=700 Score = 134 bits (148), Expect = 3e-26 Identities = 339/509 (67%), Gaps = 15/509 (3%) Strand=Plus/Plus Query 101853 TCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTGGCGGAAC 101912 |||||||||||| | ||||| | || ||||| | |||| | || || || | Sbjct 99 TCAAGAAGAAGGCTGATTGGGCGTTAAAGTGGATCGACAGCACGGAATCGTTTGCCGAGC 158 Query 101913 TAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTT 101972 ||| | || |||||| ||||||||||||||||| ||| ||| ||||||| Sbjct 159 GTATTTTGGCATTTGCTTGTGTTGAAGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATTT 218 Query 101973 TCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTA 102032 ||||| | || || | || | ||||||| ||||| | ||| |||||||| ||||| Sbjct 219 TCTGGTTGAAAAAACGTGGATTAATGCCTGGACTCACATTCTCAAATGAGTTGATTTCAC 278 Query 102033 GGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTT-TTGTTGAT 102091 | ||||| ||||||||| |||| ||||| || || ||| | | ||| | || Sbjct 279 GAGACGAGGGTCTTCATTGCGATTTTGCTTGTTTGTTGT--ATTCATTGTTGAGGAAGAA 336 Query 102092 ACCCCATCAAGAGAAAGGA-TTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGA 102150 || | ||||| || | ||| ||||| || |||||||| || || || Sbjct 337 ACTGAGT---GAGAATCGAGTGAATGAGATTGTTACCGAAGCCGTAGATATAGAGAGGGA 393 Query 102151 ATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCA 102210 ||| | | | || |||||||| |||| |||||||| || | ||||||||||| Sbjct 394 ATTCGTGTGTGATGCCTTGCCTGTTGCTCTAGTTGGAATGAATGGCGATTTGATGAGCCA 453 Query 102211 GTACATTGAATTTGTGGCAGATAAACTATTGGTTGAA----ATGGGACTAGAAAAGCACT 102266 ||||||||||||||||| |||| |||||||| | ||| | | ||| || Sbjct 454 ATACATTGAATTTGTGGCCGATA---GATTGGTTGGAGCTTTAGGGTATGGCAAA-ATCT 509 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326 |||||||| || || || | ||||| ||||| | | |||||||| | Sbjct 510 ATAATGTTCAAAATCCATTTGATTGGATGGAATTGATTTCATTGCAAGGGAAGACCAATT 569 Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 | |||||||| ||||| | || |||||| Sbjct 570 TCTTTGAAAAAAGAGTTGGGGAATATCAA 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 985715471221960